TABLE 2.
Primers used in this study
Primera | Sequence (5′ to 3′) | Reference |
---|---|---|
16S rRNA | ||
(GC-)CYA371F | CCT ACG GGA GGC AGC AGT GGG GAA TTT TCC | 27 |
CYA783R | GAC TAC (A/T)GG GGT ATC TAA TCC C(A/T) | 27 |
(GC-)CSIF | G(T/C)C ACG CCC GAA GTC (G/A)TT AC | This study |
rRNA-ITS | ||
373R | CTA ACC ACC TGA GCT AAT | 40 |
ITS3R | TAT GCA GTT TTC AAG GTT C | 39 |
23S rRNA | ||
ULR | CCT CTG TGT GCC TAG GTA TC | 13, 26 |
F (forward) and R (reverse) refer to the primer orientation in relation to rRNA genes. A 40-nucleotide G-C clamp 5′-CGC CCG CCG CGC CCC GCG CCC GGC CCG CCG CCC CCG CCC C-3′ was added to the 5′ end of the forward primers indicated with (GC-).