TABLE 3.
Percent homology observed between Afipia and Bosea species according to the gene analyzed
Speciesa | % Homology for 16S rRNA gene/complete rpoB sequence with speciesa:
|
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | |
1 | 100/100 | 99/94 | 98/90 | 97/90 | 96/89 | 96/89 | 97/88 | 95/88 | 95/88 | 98/90 | 98/90 | 92/83 | 92/81 | 92/82 | 92/83 | 92/84 | 92/83 | 91/82 | 97/89 | 97/89 |
2 | 100/100 | 98/90 | 97/89 | 96/89 | 96/89 | 97/88 | 96/88 | 96/88 | 98/89 | 98/89 | 92/83 | 92/81 | 92/81 | 92/83 | 92/84 | 92/83 | 92/83 | 97/89 | 98/89 | |
3 | 100/100 | 97/93 | 96/88 | 96/88 | 97/88 | 97/88 | 97/88 | 98/93 | 97/93 | 92/82 | 92/81 | 92/81 | 92/83 | 92/83 | 92/83 | 91/82 | 97/89 | 98/90 | ||
4 | 100/100 | 96/88 | 96/88 | 96/89 | 96/89 | 96/89 | 99/94 | 98/94 | 92/82 | 92/81 | 92/82 | 92/83 | 91/83 | 92/83 | 92/82 | 97/90 | 97/90 | |||
5 | 100/100 | 99/97 | 96/90 | 95/88 | 95/88 | 96/88 | 96/87 | 91/84 | 91/83 | 91/84 | 91/84 | 91/84 | 91/84 | 90/84 | 95/91 | 96/91 | ||||
6 | 100/100 | 96/91 | 95/89 | 95/89 | 96/88 | 96/87 | 91/84 | 91/84 | 91/84 | 90/85 | 90/85 | 90/85 | 90/84 | 95/91 | 95/91 | |||||
7 | 100/100 | 97/89 | 97/89 | 97/89 | 97/88 | 92/83 | 91/83 | 91/83 | 91/84 | 91/84 | 91/84 | 91/82 | 98/90 | 98/90 | ||||||
8 | 100/100 | 100 | 96/88 | 96/88 | 91/82 | 91/82 | 91/82 | 90/83 | 90/83 | 91/83 | 91/82 | 96/89 | 97/89 | |||||||
9 | 100/100 | 96/88 | 96/88 | 91/82 | 91/82 | 91/82 | 90/83 | 90/83 | 91/83 | 91/82 | 96/89 | 97/89 | ||||||||
10 | 100/100 | 99/96 | 92/82 | 92/81 | 92/81 | 92/83 | 92/83 | 92/83 | 92/82 | 97/89 | 97/90 | |||||||||
11 | 100/100 | 92/82 | 92/80 | 92/81 | 92/83 | 92/82 | 92/82 | 92/82 | 97/89 | 97/90 | ||||||||||
12 | 100/100 | 98/92 | 98/92 | 99/91 | 99/91 | 99/94 | 98/92 | 92/84 | 92/84 | |||||||||||
13 | 100/100 | 99/98 | 99/91 | 99/91 | 98/91 | 98/90 | 92/83 | 92/83 | ||||||||||||
14 | 100/100 | 98/91 | 98/91 | 98/91 | 98/90 | 92/83 | 92/84 | |||||||||||||
15 | 100/100 | 99/97 | 98/92 | 98/91 | 92/84 | 92/84 | ||||||||||||||
16 | 100/100 | 98/92 | 98/91 | 91/84 | 92/84 | |||||||||||||||
17 | 100/100 | 98/91 | 91/85 | 91/84 | ||||||||||||||||
18 | 100/100 | 91/83 | 91/83 | |||||||||||||||||
19 | 100/100 | 99/96 | ||||||||||||||||||
20 | 100/100 |
Species numbering is as follows: 1, A. felis; 2, A. felis genospecies A; 3, A. clevelandensis; 4, A. broomeae; 5, Afipia genospecies 1; 6, Afipia genospecies 2; 7, Afipia genospecies 3; 8, Afipia genospecies 3-related strain (34626); 9, Afipia genospecies 3-related strain (34631); 10, A. birgiae; 11, A. massiliensis; 12, B. thiooxidans; 13, B. massiliensis (63287); 14, B. massiliensis (34649); 15, B. eneae (34614); 16, B. vestrisii (34635T); 17, B. minatitlanensis; 18, Bosea sp. strain 7F; 19, Bradyrhizobium liaoningense; 20, Bradyrhizobium japonicum.