Table 4.
GSEA
|
|||||||
---|---|---|---|---|---|---|---|
Gene set | SAM-GS | Global | ANCOVA global | Tian | Tomfohr | P | FDR |
INS | 0.002 | 0.031 | 0.022 | 0.004 | 1.000 | 0.038 | 0.664 |
amiPathway | 0.042 | 0.054 | 0.032 | 0.002 | 1.000 | 0.117 | 0.777 |
cskPathway | 0.042 | 0.054 | 0.032 | 0.002 | 1.000 | 0.117 | 0.743 |
mprPathway | 0.128 | 0.180 | 0.161 | 0.148 | 0.984 | 0.138 | 0.756 |
gpcrPathway | 0.217 | 0.202 | 0.169 | 0.386 | 1.000 | 0.063 | 0.661 |
no1Pathway | 0.355 | 0.270 | 0.248 | 0.528 | 1.000 | 0.642 | 0.931 |
nfatPathway | 0.386 | 0.335 | 0.347 | 0.396 | 1.000 | 0.898 | 0.948 |
vipPathway | 0.403 | 0.350 | 0.328 | 0.462 | 1.000 | 0.394 | 0.970 |
nos1Pathway | 0.413 | 0.454 | 0.431 | 0.926 | 1.000 | 0.153 | 0.744 |
mcalpainPathway | 0.621 | 0.629 | 0.601 | 0.190 | 1.000 | 0.625 | 1.000 |
pparaPathway | 0.665 | 0.674 | 0.668 | 0.130 | 1.000 | 0.549 | 0.934 |
shh_lisa | 0.671 | 0.689 | 0.661 | 0.294 | 1.000 | 0.496 | 0.963 |
ck1Pathway | 0.704 | 0.758 | 0.762 | 0.174 | 1.000 | 0.123 | 0.793 |
crebPathway | 0.732 | 0.798 | 0.806 | 0.708 | 1.000 | 0.119 | 0.756 |
chrebpPathway | 0.745 | 0.809 | 0.804 | 0.232 | 1.000 | 0.155 | 0.753 |
CR_PROTEIN_MOD | 0.760 | 0.805 | 0.788 | 0.852 | 1.000 | 0.608 | 0.920 |
badPathway | 0.830 | 0.876 | 0.854 | 0.480 | 1.000 | 0.747 | 0.948 |
gata3Pathway | 0.921 | 0.883 | 0.880 | 0.522 | 1.000 | 0.555 | 0.933 |