. 2003 Dec;77(23):12430–12440. doi: 10.1128/JVI.77.23.12430-12440.2003

TABLE 3.

Five epitopes with fixed mutations over time^a

Region (positions of epitope boundaries)	mo psc (no. of clones)^b	Sequence^c	HLA type
Gag p17 (20-28)		`R L R P G G K K K`	A3
	2 (7/7)	`- - - - - - - - -`
	120 (12/13)	`- - - - - - - - R`
	47 (13/13)	`- - - - - - - - R`
Pol-RT (128-135)		`T A F T I P S I`	B51
	2 (7/7)	`- - - - - - - -`
	20 (13/13)	`- - - - - - - -`
	47 (13/13)	`- - - - - - -T`
Env gp120 (375-383)		`S F N C G G E F F`	B15
	2 (7/7)	`- - - - - - - - -`
	20 (12/13)	`- - - - R - - - -`
	47 (12/13)	`- - - - R - - - -`
Nef (120-128)		`F F P D W K N Y T`	B51
	2 (6/7)	`Y - - - - Q - - -`
	2 (1/7)	`Y - - - - H - - -`
	20 (3/13)	`Y - - - - H - - -`
	20 (3/13)	`Y - - - - Q S - -`
	20 (6/13)	`Y L - - - Q S - -`
	20 (1/13)	`Y - - - - D - - -`
	47 (12/13)	`Y - - - - D - - -`
	47 (1/13)	`Y - - - - Q S - -`
Env gp41 (691-710)		`V L S I V N Q V R R Q G Y S P L S F Q T`	B15
	2 (7/7)	`- - - - - - - - - - - - - - - - - - - -`
	20 (7/13)	`- - - - - - K - - - - - - - - - - - - -`
	47 (13/13)	`- - - - - - K - - - - - - - - - - - - -`

See Table 2, footnote a.

Numbers in parentheses indicate numbers of viral clones analyzed at each time out of the total number of clones.

See Table 2, footnote b.