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. 2009 Feb 6;5(2):e1000281. doi: 10.1371/journal.pcbi.1000281

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Voelz et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Above the diagonal, the grayscale values at each contact position correspond to ‘logit’ values given by the best logistic regression model trained on all the 16-mer simulation data. The background gray value corresponds to contacts not sampled by the fragment simulations, and is colored according to the logit value threshold used for the classification criterion; logit values are classified as native and appear darker, while logit values are classified as non-native and appear lighter. On the lower diagonal are shown the native contacts in the range sampled by the fragment simulations. (8-mer, 12-mer, and 16-mer predictions for all targets are shown in Text S1.)

Inline graphic — Above the diagonal, the grayscale values at each contact position correspond to ‘logit’ values given by the best logistic regression model trained on all the 16-mer simulation data. The background gray value corresponds to contacts not sampled by the fragment simulations, and is colored according to the logit value threshold used for the classification criterion; logit values are classified as native and appear darker, while logit values are classified as non-native and appear lighter. On the lower diagonal are shown the native contacts in the range sampled by the fragment simulations. (8-mer, 12-mer, and 16-mer predictions for all targets are shown in Text S1.)