TABLE 5.
Variation in pHCM1 CDSs associated with plasmid replication
| Plasmid | Location, date (yr) | Presence (+) or absence (−)a of:
|
||||
|---|---|---|---|---|---|---|
| RepA (HI1B), HCM1.54 | RepA2 (HI1A), HCM1.64 | RepE, F plasmid HCM1.137 | RepA, IncQ HCM1.220 | RepC, IncQ HCM1.221 | ||
| R27 | United Kingdom, 1961 | + | + | + | - | - |
| 40R181 | Mexico, 1972 | + | + | + | - | - |
| 40R344 | India, 1972 | + | + | + | - | - |
| 42R917 | Vietnam, 1970s | + | + | + | - | - |
| 44R311 | Thailand, 1970s | + | + | + | - | - |
| 44R315 | Thailand, 1970s | + | + | + | - | - |
| pPB36 | Peru, 1981 | + | + | + | - | - |
| pSTY2 | Vietnam, 1992 | + | + | + | + | + |
| pHCM1 | Vietnam, 1993 | + | + | + | + | + |
| pSTY1 | Vietnam, 1993 | + | + | + | + | + |
| pTy7 | Vietnam, 1993 | + | + | + | + | + |
| pTy5 | Vietnam, 1993 | + | + | + | + | + |
| pSTY3 | Vietnam, 1993 | + | + | + | + | + |
| pSTY4 | Vietnam, 1993 | + | + | + | - | - |
| pSTY5 | Vietnam, 1993 | + | + | + | + | + |
| pSTY6 | Vietnam, 1993 | + | + | + | - | - |
| pSTY7 | Vietnam, 1996 | + | + | - | + | + |
| p61-57-85 | Pakistan, 2000 | + | + | - | + | + |
a
+, A normalized ratio indicates the presence of this CDS; -, normalized ratios are below the lower cutoff ratio, indicating that the CDS is absent or highly divergent.