TABLE 1.
Gene | Primer | Sequence (5′ to 3′) | Annealing temp (°C) | Reference |
---|---|---|---|---|
16S rRNAa | pA | AGAGTTTGATCCTGGCTCAG | 62 | 11 |
pH | AAGGAGGTGATCCAGCCGCA | |||
sul1 | sul1bF | CTTCGATGAGAGCCGGCGGC | 63 | 29 |
sul1bR | GCAAGGCGGAAACCCGCGCC | |||
sul2 | sul2F | TCGTCAACATAACCTCGGACAG | 60 | V. Enne |
sul2R | GTTGCGTTTGATACCGGCAC | |||
sul3 | sul3F | GAGCAAGATTTTTGGAATCG | 51 | 18 |
sul3R | CATCTGCAGCTAACCTAGGGCTTTGGA | |||
intI1 | intA | ACAGGGCAAGCTTAGTAAAGCC | 67 | 22 |
intB | CTCGCTAGAACTTTTGGAAA | |||
intI2 | int2F | CACGGATATGCGACAAAAAGGT | 58.5 | 32 |
int2R | GTAGCAAACGAGTGACGAAATG | |||
qacE | KazamF1 | GGGAATTCGCCCTACACAACAAATTGGGAGA | 50 | 14 |
KazamR1 | TACTCGAGTTAGTGGGCACTTGCTTTGG | |||
qacEΔ1 | KazamF2 | GGGAATTCGCCCTACACAACAAATTGGGAGA | 60 | 14 |
KazamR2 | GCTGCAGCTGCGGTACCACTGCCACAA |
16S rRNA gene sequence from bp 8 to 1522.