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Differences in top 5 clusters sampled by ROSETTA, HREM, and TREM. (A) Shown is how the average rmsd of the top five clusters depends on protein length. (B) Shown is how the average cluster size (for the top five largest clusters) depends on protein length. In both cases we present data for the entire set of 40 proteins for the tree methods: ROSETTA, HREM, and TREM. Superior performance of HREM is clear for both measures.
