Table 2.

Permutation testing significance cut-offs.

Epistasis Model			Permutation Distribution Cut-Off Prediction Error (%)
Number of Functional Loci	Minor Allele Frequency	Heritability	1 Locus	2 Locus	3 Locus	4 Locus	5 Locus	Omnibus
2	0.2	3%	43.5	43.71	44.48	43.42	44.19	43.5
2	0.2	2%	43	42.5	43.83	43.84	43.82	41.25
2	0.2	1.5%	43.75	42.85	43.73	43.64	43.45	42.5
2	0.2	1%	43.5	42.75	44.12	45.05	44.24	41.84
2	0.2	0.5%	43.5	43.25	43.19	42.68	43.68	40.75
2	0.4	3%	42.75	43.75	44.12	43.15	44.22	41.02
2	0.4	2%	44.5	44.75	45	44.55	43.77	42.25
2	0.4	1.5%	44.25	43.5	42.46	42.34	43.62	40.25
2	0.4	1%	43	43.75	42.5	44.53	44.28	40.25
2	0.4	0.5%	43.5	43.25	43.31	44.2	43.2	41.5
3	0.2	3%	43.25	43.36	43.94	43.92	43.96	42.75
3	0.2	2%	43.25	42.5	44.09	44.14	45.71	41.5
3	0.2	1.5%	42.75	43.75	46.08	45.34	44.2	42.25
3	0.2	1%	42.75	43.75	43.85	43.47	44.36	42.5
3	0.2	0.5%	43.5	43.25	42.79	42.9	43.28	42.5
3	0.4	3%	43.25	43	45.5	45.74	45.15	42.5
3	0.4	2%	42.5	45	43.75	43.14	44.2	42.25
3	0.4	1.5%	42.75	45.25	44.22	45.56	43.74	42.5
3	0.4	1%	44.5	43	44.25	44.79	42.89	41.5
3	0.4	0.5%	43.25	44.5	43.86	44.92	44.5	42.09
4	0.2	3%	44.5	41.5	43.86	43.39	44.37	41.5
4	0.2	2%	43	42.6	43.29	45.76	45.13	42.5
4	0.2	1.5%	42.5	42.85	43.4	42.54	43.02	40.59
4	0.2	1%	43.75	43.1	43.16	44.07	44.15	41.22
4	0.2	0.5%	44	44	43.56	46.65	43.85	42.97
4	0.4	3%	44.5	43.25	44.49	44.03	45.2	41.07
4	0.4	2%	42.25	43.5	43.84	43.66	44.18	40.75
4	0.4	1.5%	42.25	43.5	45.25	44.08	42.64	41.49
4	0.4	1%	41.5	45	43.25	44.05	44.2	41.5
4	0.4	0.5%	41.75	44	44.85	44.4	43.41	41
5	0.2	3%	44.25	42.25	44.85	43.75	45.43	41
5	0.2	2%	42.75	43.5	44.63	45.32	46.04	41.05
5	0.2	1.5%	43.25	41.5	43.57	44.88	44.35	40.75
5	0.2	1%	43.75	44.62	45.1	43.54	45.06	41.71
5	0.2	0.5%	44	43.62	44.25	44.05	44.57	40.08
5	0.4	3%	43.5	42.5	43.75	43.99	43.11	41.25
5	0.4	2%	43.25	44	44.5	44.51	44.23	40.78
5	0.4	1.5%	45	43.5	44.97	44.96	43.83	42.5
5	0.4	1%	42.25	42.5	44.75	45.32	43.43	40.75
5	0.4	0.5%	44	43.25	43.5	45.14	45.01	39.75