TABLE 1.
qPCR primers and probes
Gene | Primer/probe | Sequence (5′-3′) | GenBank accession no. |
---|---|---|---|
ARP | ARP 67 Fwd | CTG CAA AGA TGC CCA GGG A | NM_131580 |
ARP 187 Rev | TTG GAG CCG ACA TTG TCT GC | ||
ARP Probe | TTC TGA AAA TCA TCC AAC TGC TGG ATG ACT ACCa | ||
IFN-γ | IFN-γ Fwd | CTT TCC AGG CAA GAG TGC AGA | NM_212864 |
IFN-γ Rev | TCA GCT CAA ACA AAG CCT TTC G | ||
IFN-γ Probe | ACC GCT ATG GGC GAT CAA GGA AAA CGA C | ||
TNF-α | TNF-α Fwd | TCG CAT TTC ACA AGG CAA TTT | NM_212859 |
TNF-α Rev | GGC CTG GTC CTG GTC ATC TC | ||
TNF-α Probe | AGG CTG CCA TCC ATT TAA CAG GTG GAT ACA A | ||
IL-1β | IL-1β Fwd | CAT CCA AGA GCG TGA AGT GAA | NM_212844 |
IL-1β Rev | AAC ACA CAG GCT GAG CAG AAG T | ||
IL-1β Probe | TCC ACA TTT GCA GGC CGT CAC C | ||
iNOS | iNOS Fwd | CCA GAG CCT TCG TCT GGA GA | NM_001104937 |
iNOS Rev | TTA GAG CCT GGA CGA GCG TG | ||
iNOS Probe | CCA GCC ATG AGG GAA AGA GAT GGC AG | ||
Francisella sp. 16S rRNA | FspQPCR Fwd | GCG AAG GCA ACA TTC TGG AT | DQ377177 |
FspQPCR Rev | GCG TTG CAT CGA ATT AAA CCA | ||
FspQPCR probe | AAT ACT GAC ACT GAG GGA CGA AAG CGT GG |
There is a single-nucleotide polymorphism between the sequence for the EKW fish used in our experiments and the sequence in GenBank. The nucleotide is in bold; in the GenBank sequence, the A is a T.