TABLE 1.
General features of the S. carnosus TM300 chromosome in comparison with selected other staphylococcal species representatives
| Parameter | Value in:
|
||||
|---|---|---|---|---|---|
| Staphylococcus carnosus TM300 | Staphylococcus aureus N315 | Staphylococcus epidermidis RP62A | Staphylococcus haemolyticus JCSC1435 | Staphylococcus saprophyticus ATCC15305 | |
| Size (bp) | 2,566,428 | 2,814,816 | 2,616,530 | 2,685,015 | 2,516,575 |
| Coding density (%) | 86.0 | 83.4 | 83.9 | 86 | 83.5 |
| G+C content (%) | |||||
| Total | 34.6 | 32.8 | 32.1 | 32.8 | 33.2 |
| Coding sequences | 35.2 | 33.6 | 32.9 | 33.4 | 34.0 |
| No. of coding sequences | 2,474 | 2,593 | 2,553 | 2,678 | 2,446 |
| No. of RNAs | |||||
| 23S | 5 | 5 | 6 | 5 | 6 |
| 16S | 5 | 5 | 6 | 5 | 6 |
| 5S | 5 | 6 | 7 | 6 | 7 |
| tRNAs | 60 | 62 | 61 | 60 | 60 |
| tmRNAs | 1 | 1 | 1 | 1 | 1 |
| No. of mobile elements | |||||
| IS elements | 20 | 23 (34 dega) | 82 (60 deg) | 2 | |
| Transposons | 5 | 4 | 2 | ||
| Transposases | (1 deg) | 33 (10 deg) | 5 (3 deg) | 92 | 9 |
| Genomic islands | 1 | 3 | 2 | 5 | 1 |
| Staphylococcal cassette chromosomes | 1 | 1 | 1 | 2 | |
| Prophages | 1 | 1 | 1 | 2 | 1 |
| Plasmids | 1 | 1 | 2 | ||
deg, degenerated.