TABLE 4.
Effect of sequence length on taxonomic placement and distance based on ARB alignment
Taxona | Full-length
|
Truncated
|
||
---|---|---|---|---|
% Sequence similarity | No. of sequences | % Sequence similarity | No. of sequences | |
Phylum | ||||
Acidobacteria | 58 | 176 | 46 | 175 |
Bacteroidetes | 52 | 106 | 46 | 107 |
CD OD1 | 57 | 20 | 46 | 20 |
Gemmatimonadetes | 75 | 42 | 51 | 41 |
Planctomycetes | 46 | 88 | 39 | 88 |
Class | ||||
Betaproteobacteria | 61 | 141 | 54 | 144 |
CD, candidate division.