Table 1.
dihedral angle | ν (deg) | η (deg) | 〈ΔG〉 | 〈|ΔΔG|〉 (2.5 × 104) | 〈|ΔΔG|〉 (105) | 〈|ΔΔG|〉 (106) |
---|---|---|---|---|---|---|
residue 1, χ1 | −123 | −76 | −2.07 ± 0.01 | 0.37 ± 0.25 | 0.28 ± 0.18 | 0.10 ± 0.07 |
residue 2, χ2 | 120 | −120 | −1.42 ± 0.02 | 0.31 ± 0.16 | 0.32 ± 0.17 | 0.07 ± 0.07 |
residue 1, ψ | 107 | −29 | 1.72 ± 0.04 | 0.47 ± 0.31 | 0.20 ± 0.11 | 0.14 ± 0.14 |
residue 2, ϕ | 43 | 105 | −0.04 ± 0.01 | 0.11 ± 0.09 | 0.08 ± 0.08 | 0.03 ± 0.02 |
residue 2, ϕ | 105 | 231 | −1.27 ± 0.05 | 0.77 ± 0.50 | 0.70 ± 0.50 | 0.20 ± 0.11 |
residue 2, ϕ | 43 | 231 | −1.31 ± 0.06 | 0.74 ± 0.48 | 0.69 ± 0.52 | 0.21 ± 0.12 |
The chosen values of ν and η correspond to relative maxima indentified in the unbiased ensemble (see Figure 6) generated with an infinite sequence of Langevin forces. ΔG values, reported with standard deviations in kcal/mol, refer to the transition free energy for the unbiased ensemble (see eq 6); angular brackets 〈 〉 refer to averages from eight independent trajectories. Similarly, |ΔΔG| values refer to absolute changes in the transition free energy if a finite sequence of Langevin forces (of length specified in parentheses) is used (see eq 7).