Table 6.
Average SPS, CS and SCI scores (in %) on Data-set 1 of BRAliBase II
| TCoffee |
MUSCLE |
ProbConsRNA |
|||||||
|---|---|---|---|---|---|---|---|---|---|
| SPS | |||||||||
| 0–55% {96} | 57.87 | 63.01 | 2 × 10−11 | 65.10 | 67.65 | 0.01 | 73.20 | 74.86 | 1 × 10−5 |
| 55–75% {218} | 80.07 | 83.41 | 5 × 10−22 | 83.62 | 84.35 | – | 86.08 | 87.06 | 4 × 10−8 |
| 75–100% {167} | 95.01 | 95.23 | – | 95.28 | 95.28 | – | 96.05 | 96.19 | – |
| All {481} | 80.83 | 83.44 | 9 × 10−32 | 83.97 | 84.81 | 0.004 | 86.97 | 87.80 | 1 × 10−12 |
| CS | |||||||||
| 0–55% {96} | 36.42 | 41.68 | 2 × 10−7 | 45.83 | 48.73 | 0.02 | 56.32 | 57.87 | 0.005 |
| 55–75% {218} | 65.29 | 70.56 | 7 × 10−23 | 71.03 | 72.30 | 0.02 | 74.57 | 75.97 | 2 × 10−6 |
| 75–100% {167} | 89.90 | 90.46 | – | 90.73 | 90.76 | – | 91.94 | 92.24 | 0.03 |
| All {481} | 68.07 | 71.70 | 5 × 10−28 | 72.84 | 74.00 | 0.002 | 76.96 | 78.01 | 2 × 10−8 |
| SCI | |||||||||
| 0–55% {96} | 31.84 | 46.13 | 3 × 10−14 | 50.80 | 55.22 | 2 × 10−4 | 57.33 | 61.63 | 3 × 10−5 |
| 55–75% {218} | 54.17 | 66.92 | 2 × 10−27 | 66.26 | 69.88 | 3 × 10−4 | 67.07 | 71.22 | 2 × 10−17 |
| 75–100% {167} | 87.58 | 88.75 | 0.03 | 89.30 | 89.99 | 0.03 | 89.23 | 90.09 | 1 × 10−4 |
| All {481} | 61.31 | 70.35 | 2 × 10−39 | 71.17 | 73.93 | 2 × 10−7 | 72.82 | 75.85 | 8 × 10−23 |
Each subset includes all alignments of five RNA sequences with average pairwise identity within the specified range. For each algorithm, the higher accuracy value is in bold.