Table 9.
Average SPS and CS scores (in %) on HOMSTRAD
| TCoffee |
MUSCLE |
ProbCons |
MUMMALS |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SPS | ||||||||||||
| 2 seqs {630} | 80.88 | 81.17 | 1 × 10−6 | 80.40 | 81.55 | 1 × 10−11 | 81.65 | 82.42 | 1 × 10−20 | 83.50 | 83.56 | 6 × 10−6 |
| 3 seqs {169} | 80.52 | 81.29 | 2 × 10−9 | 81.26 | 82.52 | 1 × 10−5 | 81.50 | 82.20 | 2 × 10−8 | 83.33 | 83.43 | 0.002 |
| 4–5 seqs {122} | 79.78 | 80.45 | 1 × 10−9 | 80.97 | 81.23 | – | 82.26 | 82.89 | 2 × 10−9 | 83.53 | 83.59 | 0.04 |
| ⩾ 6 seqs {111} | 81.55 | 81.94 | 4 × 10−4 | 82.34 | 82.72 | 0.04 | 83.64 | 83.95 | 1 × 10−7 | 85.15 | 85.27 | – |
| CS | ||||||||||||
| 2 seqs {630} | 80.88 | 81.17 | 1 × 10−6 | 80.40 | 81.55 | 1 × 10−11 | 81.65 | 82.42 | 1 × 10−20 | 83.50 | 83.56 | 6 × 10−6 |
| 3 seqs {169} | 74.51 | 75.50 | 1 × 10−9 | 75.41 | 77.14 | 6 × 10−6 | 75.54 | 76.43 | 1 × 10−6 | 77.92 | 78.06 | 0.007 |
| 4–5 seqs {122} | 68.38 | 69.48 | 1 × 10−10 | 70.17 | 70.69 | – | 71.69 | 72.94 | 2 × 10−10 | 73.58 | 73.74 | 0.02 |
| ⩾6 seqs {111} | 59.59 | 61.23 | 8 × 10−10 | 62.03 | 62.80 | 0.04 | 62.77 | 63.79 | 3 × 10−8 | 65.47 | 65.93 | 0.04 |
Each subset includes all alignments with number of protein sequences within the specified range. For each algorithm, the higher accuracy value is in bold.