Table III.
The most abundant transcripts in tetrad-stage anthers with TPM >5× those in pollen (current SBS transcriptomes) and other organs (previously reported MPSS transcriptomes) and the available mutants
Immature panicles contained developing flowers, including maturing anthers; thus, their transcripts were not considered in the 5× selection. The most abundant 50 transcripts in each developmental stage are shown in Supplemental Table S1, which includes full names of the mutant sources.
| TIGR_Gene Annotation | SBS
|
MPSS
|
Insertion Mutant | Activation Mutant | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Developing Anthers
|
Pollen | Germinated Seed | Young Leaf | Young Root | Mature Leaf | Mature Root | Stem | Immature Panicle | Ovary and Stigma | Pollen | |||||||||
| Meiosis | Tetrad | Early Vacuolated | Late Vacuolated | Mitosis | Mature Pollen | ||||||||||||||
| TPM | |||||||||||||||||||
| Os09g35700 | Lipid-transfer p | 16,153 | 49,751 | 13,603 | 81 | 1 | 4 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 708 | 0 | 0 | ||
| Os03g59380 | Lipid-transfer p | 1,358 | 17,792 | 20,728 | 35,555 | 512 | 169 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 399 | 29 | 3 | TRIM | |
| Os01g03670 | Dihydroflavonol-4-red | 47 | 11,738 | 1,649 | 16 | 5 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 117 | 0 | 0 | ||
| Os01g41710 | Chlorophyll a-b bind p | 1,373 | 11,472 | 17,209 | 17,289 | 2,617 | 45 | 0 | 29 | 20 | 0 | 0 | 0 | 0 | 369 | 55 | 0 | PFG, TRIM | |
| Os01g12020 | Lipid-transfer p | 9,549 | 9,683 | 105 | 29 | 19 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 120 | 0 | 0 | TRIM | |
| Os02g45530 | GMC oxidoreductase | 131 | 7,496 | 3,672 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | TRIM | TRIM |
| Os08g43290 | Lipid-transfer p | 554 | 6,768 | 1,261 | 28 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3,537 | 0 | 0 | TRIM | |
| Os07g46210 | Unknown p | 2 | 5,127 | 2,210 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 25 | 0 | 0 | TRIM | |
| Os10g42620 | Dihydroflavonol-4-red | 9 | 4,613 | 2,445 | 345 | 7 | 1 | 1 | 22 | 0 | 0 | 0 | 0 | 8 | 26 | 3 | 0 | PFG, RMD, TRIM | TRIM |
| Os04g08280 | Unknown p | 2 | 3,728 | 342 | 7 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 119 | 0 | 0 | ||
| Os04g27950 | Unknown p | 16 | 3,015 | 273 | 128 | 33 | 9 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 15 | 0 | 0 | PFG, RMD | TRIM |
| Os01g14850 | MFS18 p | 1,237 | 2,407 | 426 | 88 | 10 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | TRIM | |
| Os02g44630 | Aquaporin | 477 | 2,391 | 1,496 | 883 | 421 | 685 | 0 | 149 | 112 | 29 | 0 | 51 | 346 | 245 | 51 | 70 | PFG, RTIM | |
| Os03g47910 | Unknown p | 807 | 2,357 | 923 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 489 | 0 | 0 | ||
| Os08g03520 | Gly-rich p | 1,782 | 2,108 | 1,598 | 3,136 | 206 | 66 | 2 | 47 | 15 | 0 | 0 | 72 | 87 | 69 | 167 | 0 | ||
| Os01g41170 | Unknown p | 0 | 1,914 | 8,675 | 22,039 | 1,105 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 318 | 0 | 242 | PFG | |
| Os01g49650 | Lipid-transfer p | 2,632 | 1,850 | 39 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1,591 | 0 | 0 | Geno, PFG | |
| Os08g03682 | Cytochrome P450 | 43 | 1,705 | 812 | 5 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 3 | 469 | 0 | 0 | ||
| Os02g38260 | Hydrolase | 0 | 1,628 | 96 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 46 | 0 | 0 | ||