Table 1.
Microsatellite loci motif and in situ localization to polytene chromosomes
| Accession number | Locus name | Motif | Map position | T (°C) | |
| 1 | EU489746 | Boms1 | (GT)13 | - | |
| 2 | AF467831 | Boms2 | (CA)8TA(CA)3 | 4 (IL) | 58 |
| 3 | EU489747 | Boms3 | (GT)14 (CAA)3CAG(CAA)3 |
no specific signal | |
| 4 | EU489748 | Boms4 | (GT)15GC(GT)3GC(GT)13GA(GT)4 | - | |
| 5 | EU489749 | Boms5 | (CA)10TA(CA)2 | 95 (VR) | |
| 6 | EU489750 | Boms6 | (CA)9 (GT)3GG(GT)11TT(GT)2 |
- | |
| 7 | EU489751 | Boms7 | (CA)7CC(CA)3 | - | |
| 8 | EU489752 | Boms8 | (CA)7CG(CA)5 | - | |
| 9 | EU489753 | Boms9 | (GT)10CTGA(GT)3 | - | |
| 10 | AF467830 | Boms10 | (CA)10GA(CA)2 | no specific signal | 55–62 |
| 11 | AF467832 | Boms11 (Bo-D37) | (CA)7CG(CA)3 | - | |
| 12 | EU489754 | Boms12 | (CA)10AACA | 26 (IIL) | 58 |
| 13 | EU489755 | Boms13 | GTGA(GT)10 | - | |
| 14 | EU489756 | Boms14 | (AT)2GT(AT)11 | - | |
| 15 | EU489757 | Boms15 | (GT)11GA(GT)2 | no specific signal | 55–62 |
| 16 | AF467829 | Boms16 (Bo-D46) | (CA)10 | 42(IIR) | 58 |
| 17 | EU489758 | Boms17 | (TG)13 | 44(IIR) | 58 |
| 18 | AF467828 | Boms18 | (CA)13 | - | |
| 19 | EU489759 | Boms19 | CAAA(CA)10 | - | |
| 20 | EU489760 | Boms20 | (GT)13+ | 8(IL) 2 signals | 58 |
| 21 | AF467827 | Boms21 | GTGG(GT)13ATGT | 73(IVL) | 58 |
| 22 | DQ078248 | Boms22 | CAT(CA)7(TA)3TT(TA)5 | 5(IL) | 58 |
| 23 | EU489761 | Boms23 | (CA)12 | 3(IL) | 58 |
| 24 | EU489762 | Boms24 | (GT)12 | 64(IIIR) | 58 |
| 25 | AF467826 | Boms25 | (GT)12 | 30(IIL), 97&100(VR) | 58/62 |
| 26 | EU489763 | Boms26 | (GT)8AT(GT)2 | 26(IIL) | 58 |
| 27 | AF467825 | Boms27 (Bo-D52) | (GA)14 | 83(IVR) | 58 |
| 28 | EU489764 | Boms28 | (CA)12CT(CA)5 (GA)12GG(GA)11 | - | |
| 29 | AF467824 | Boms29 | (GT)10 | - | |
| 30 | AF467823 | Boms30 | (GT)17 | 5–6(IL) | 58 |
| 31 | DQ078249 | Boms31 | (GT)4GC(GT)6GC(GT)2 | 63&65(IIIR) | 58,62 |
| 32 | EU489765 | Boms32 | (CA)14 | - | |
| 33 | EU489766 | Boms33 | (CA)2TA(CA)9 | no signal | 55–58 |
| 34 | EU489767 | Boms34 | (CA)3CTA(CA)8 | 86(IVR) | 58 |
| 35 | EU489768 | Boms35 | (CA)48 | - | |
| 36 | EU489769 | Boms36 | (CA)24 | - | |
| 37 | EU489770 | Boms37 | (TG)4G(TG)3 | - | |
| 38 | EU489771 | Boms38 | (GT)10AT(GT)6 | - | |
| 39 | EU489772 | Boms41 | GTAT(GT)8GCGTGA(GT)4 | - | |
| 40 | EU489773 | Boms42 | (AT)3CC(GT)3(AT)3(GT)14GAGT | - | |
| 41 | EU489774 | Boms43 | (CA)18C(CA)3 | - | |
| 42 | EU489775 | Boms45 | TAA(CAA)6 | - | |
| 43 | EU489776 | Boms47 | (AG)12TG(AG)8(TG)3(AG)10 | - | |
| 44 | EU489777 | Boms48 | (TC)5C8G(CT)4C5G(CT)5C5G(CT)6CCTCG(CT)8 | - | |
| 45 | EU489778 | Boms49 | (CA)3CT(CA)3CT(CA)3CT(CA)9 | - | |
| 46 | EU489779 | Boms50 | (GA)18N4(GA)2G4(GA)2G4(GA)14CA(GA)2TA(GA)5 | - | |
| 47 | EU489780 | Boms53 | T8GT10GT7CGT9GT6 | - | |
| 48 | EU489781 | Boms55 | (AG)13GG(AG)3GC(AG)8 | - | |
| 49 | EU489782 | Boms58 | A6CA3GCA6TA5CA5 | - | |
| 50 | DQ078250 | Boms59 | TGTA(TG)10 | - | |
| 51 | DQ078251 | Boms60 | (CAAA)2 A6CA3GCA6TA5CA4N26A2GA9CGA4 |
- | |
| 52 | DQ078252 | Boms61 | T23G2T3GT3GT2GTAAT4C2T5CTGT5 | - | |
| 53 | EU489783 | Boms62 | A11CA11CATCACA4GA2GA8 | - | |
| 54 | EU489784 | Boms63 | A3CA3CCA18 | - | |
| 55 | EU489785 | Boms64 | CAGA(CA)2C(CA)4N12(CA)4C(CA)2 (CA)5C(CA)4C(CA)4ACACC(CA)3C(CA)3 |
- | |
| 56 | EU489786 | Boms68 | T8 | - | |
| 57 | EU489787 | Boms69 | (A/G TT)4N4T7(CTT)2AGT4CA2T4GT4 | - | |
| 58 | EU489788 | Boms70 | (GT)-rich | - |
Boms1–34: Microsatellite loci isolated from total, small-insert DNA libraries
Boms35–70: Microsatellite loci isolated from enriched libraries
T: annealing temperature for in situ hybridization
(-): not tested
N: bases that do not present any motif