Table 4.

Results of single point association analysis combining family and case-control data. For estimation of empirical p-value, we estimated empirical p-value based on 10,000 replicates.

SNP #	SNP	Obs	Exp	Chi-sq	P	Pointwise Empirical P	Studywise Empirical P
1	rs2532501	171	155.2	6.739	0.009434	0.0109	0.0649
2	rs2532500	177	159.2	8.54	0.00347	0.0064	0.0259
3	rs2008134	103	106.2	0.3203	0.5714	0.6123	0.9954
4	rs2072373	57	64.78	2.711	0.09968	0.1093	0.4803
5	rs7311174	99	98.95	8.68E-05	0.9926	0.9800	1.0000
6	rs2072374	98	98.35	0.003902	0.9502	0.9620	1.0000
7	rs740850	187	165.3	11.84	0.00058	0.0004	0.0048
8	rs3741916	76	87.93	5.293	0.02141	0.0177	0.1361
9	rs3741918	62	70.32	3.028	0.08183	0.0758	0.4076
10	rs1060620	92	95.93	0.5488	0.4588	0.4650	0.9810
11	rs1060619	89	92.26	0.3965	0.5289	0.5396	0.9937
12	rs740852	30	28.44	0.2185	0.6402	0.6549	0.9988