Skip to main content
. Author manuscript; available in PMC: 2010 Mar 1.
Published in final edited form as: Proteins. 2009 Mar;74(4):929–947. doi: 10.1002/prot.22202

Table II.

Residue contact prediction results when tested on 11 α-helical test proteins of test set 1. (Cheng and Baldi, 2007)

Residue Separation =6 Residue Separation =12 Residue Separation =24

PDB ID Length Accuracy AvgTPdis AvgFPdis Accuracy Accuracy

1IG5A 75 0.969(31/32) 8.9 12.6 0.963(26/27) 1.000(12/12)
1HXIA 108 0.824(14/17) 8.3 14.4 0.818(9/11) NA (0/0)
1SKNP 74 0.417(5/12) 10.1 14.2 0.333(3/9) NA(0/0)
1ELRA 128 0.971(33/34) 8.8 12.6 1.000(11/11) NA(0/0)
1E29A 135 0.714(15/21) 7.3 15.2 0.500(5/10) 0.500(5/10)
1CTJA 89 0.632(12/19) 9.1 13.7 0.786(11/14) 0.889(8/9)
1J75A 57 0.885(23/26) 7.4 12.4 0.800(8/10) 0.875(7/8)
1ECAA 136 0.400(12/30) 9.5 17.1 0.263(5/19) NA(0/0)
1FIOA 190 0.700(21/30) 9.2 17.0 0.692(18/26) 0.778(14/18)
1C75A 71 0.455(5/11) 10.1 14.1 0.455(5/11) 0.600(3/5)
1HCRA 52 0.800(4/5) 8.8 12.4 1.000(1/1) NA(0/0)

Average 0.706 8.86 14.15 0.692 0.774