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. 2009 Feb 13;4(2):e4443. doi: 10.1371/journal.pone.0004443

Table 1. Similarity to exocyst subunits of known structures.

Length(aa) scExo70p musExo70 Exo84CT Sec6CT dmSec15CT
2b1e_A 2pft_A 2d2s_A 2fji_1 2a2f_X
YJL085W Exo70p 622 0 (60–623) 0 (70–622) 2.1E-04 (94–288) 1.7E-01 (12–342) 6.2E-03 (241–383)
YBR102C Exo84p 752 3.8E-03 (549–747) 8.5E-04 (549–707) 0 (523–753)
YIL068C Sec6p 804 3.0E-01 (98–666) 5.1E-01 (361–802) 2.5E-01 (174–385) 0 (407–805) 4.8E-07 (413–728)
YGL233 Sec15p 909 2.6E-02 (159–684) 2.7E-01 (432–746) 4.6E-02 (81–252) 4.2E-03 (491–861) 0 (475–836)
YER008C Sec3p 970 1.0E-07 (720–1333) 2.6E-08 (733–1329) 4.7E-03 (1046–1305)
YDR166C Sec5p 1335 9.4E-01 (221–660) 4.4E-01 (153–551) 2.2E-06 (228–378) 2.1E-04 (687–937) 4.8E-08 (625–920)
YPR055W Sec8p 870 1.3E-01 (157–686) 7.7E-02 (404–677) 1.4E-05 (161–228) 7.7E-03 (590–997) 3.6E-07 (864–967)
YLR166C Sec10p 1064 1.3E-02 (187–695) 3.1E-03 (186–465) 1.7E-03 (178–393) 2.0E-04 (563–860) 1.4E-06 (578–826)

HMM P-values of the comparisons are shown in bold, with the range of the aligned residues in parentheses below. Yeast protein lengths are indicated by the number of amino acids (aa). SGD identifiers are indicated in the first column of the table, and PDB identifiers are indicated in the second row of the table. Blank cells have P-values>1.