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. 2009 Feb 6;284(6):3563–3576. doi: 10.1074/jbc.M807778200

TABLE 3.

Steady-state kinetic parameters for one-base incorporation opposite G and N2-alkyl G adducts by Dpo4

The extent of conversion of primer to the product was kept <20% by adjustment of the enzyme concentration and reaction time.

Template dNTP Km,dNTP kcat × 103 kcat/Km × 105 Efficiency relative to dCTP:G Misincorporation frequency
μm s-1 μm-1 s-1
G C 1.2 ± 0.3 960 ± 50 8.2 × 104 1
A 490 ± 60 5.7 ± 0.2 1.2 68,000-fold less 1.4 × 10-5
G 190 ± 20 6.3 ± 0.1 3.3 25,000-fold less 4.1 × 10-5
T 780 ± 140 34 ± 2 4.4 19,000-fold less 5.4 × 10-5
N2-MeG C 1.9 ± 0.5 500 ± 21 2.7 × 104 3-fold less
A 650 ± 70 7.6 ± 0.3 1.2 68,000-fold less 0.44 × 10-4
G 380 ± 80 23 ± 2 6.1 13,000-fold less 2.3 × 10-4
T 320 ± 90 40 ± 5 12 6,800-fold less 4.7 × 10-4
N2-EtG C 7.4 ± 1.0 83 ± 3 1100 75-fold less
A 360 ± 60 3.4 ± 0.2 0.93 88,000-fold less 0.82 × 10-3
G 210 ± 30 5.5 ± 0.3 2.6 32,000-fold less 2.4 × 10-3
T 78 ± 18 2.6 ± 0.1 3.4 24,000-fold less 3.0 × 10-3
N2-IbG C 16 ± 3 100 ± 5 650 126-fold less
A 280 ± 50 3.0 ± 0.2 1.1 75,000-fold less 1.6 × 10-3
G 170 ± 10 8.8 ± 0.2 5.2 16,000-fold less 8.0 × 10-3
T 140 ± 10 1.6 ± 0.0 1.2 68,000-fold less 1.9 × 10-3
N2-BzG C 21 ± 4 270 ± 20 1300 63-fold less
A 190 ± 30 2.1 ± 0.1 1.1 75,000-fold less 0.89 × 10-3
G 120 ± 20 2.2 ± 0.1 1.8 46,000-fold less 1.4 × 10-3
T 320 ± 53 4.4 ± 0.2 1.4 59,000-fold less 1.1 × 10-3
N2-NaphG C 5.2 ± 1.0 110 ± 3 2200 37-fold less
A 320 ± 60 1.0 ± 0.1 0.33 248,000-fold less 1.5 × 10-4
G 180 ± 20 3.8 ± 0.1 2.2 37,000-fold less 9.8 × 10-4
T 120 ± 20 1.5 ± 0.1 1.3 63,000-fold less 5.6 × 10-4
N2-AnthG C 1.3 ± 0.15 43 ± 1 3200 26-fold less
A 360 ± 450 0.78 ± 0.03 0.21 390,000-fold less 0.67 × 10-4
G 870 ± 140 6.5 ± 0.5 0.75 109,000-fold less 2.3 × 10-4
T 100 ± 10 2.3 ± 0.05 2.3 36,000-fold less 7.1 × 10-4