TABLE 3.
Steady-state kinetic parameters for one-base incorporation opposite G and N2-alkyl G adducts by Dpo4
The extent of conversion of primer to the product was kept <20% by adjustment of the enzyme concentration and reaction time.
Template | dNTP | Km,dNTP | kcat × 103 | kcat/Km × 105 | Efficiency relative to dCTP:G | Misincorporation frequency |
---|---|---|---|---|---|---|
μm | s-1 | μm-1 s-1 | ||||
G | C | 1.2 ± 0.3 | 960 ± 50 | 8.2 × 104 | 1 | |
A | 490 ± 60 | 5.7 ± 0.2 | 1.2 | 68,000-fold less | 1.4 × 10-5 | |
G | 190 ± 20 | 6.3 ± 0.1 | 3.3 | 25,000-fold less | 4.1 × 10-5 | |
T | 780 ± 140 | 34 ± 2 | 4.4 | 19,000-fold less | 5.4 × 10-5 | |
N2-MeG | C | 1.9 ± 0.5 | 500 ± 21 | 2.7 × 104 | 3-fold less | |
A | 650 ± 70 | 7.6 ± 0.3 | 1.2 | 68,000-fold less | 0.44 × 10-4 | |
G | 380 ± 80 | 23 ± 2 | 6.1 | 13,000-fold less | 2.3 × 10-4 | |
T | 320 ± 90 | 40 ± 5 | 12 | 6,800-fold less | 4.7 × 10-4 | |
N2-EtG | C | 7.4 ± 1.0 | 83 ± 3 | 1100 | 75-fold less | |
A | 360 ± 60 | 3.4 ± 0.2 | 0.93 | 88,000-fold less | 0.82 × 10-3 | |
G | 210 ± 30 | 5.5 ± 0.3 | 2.6 | 32,000-fold less | 2.4 × 10-3 | |
T | 78 ± 18 | 2.6 ± 0.1 | 3.4 | 24,000-fold less | 3.0 × 10-3 | |
N2-IbG | C | 16 ± 3 | 100 ± 5 | 650 | 126-fold less | |
A | 280 ± 50 | 3.0 ± 0.2 | 1.1 | 75,000-fold less | 1.6 × 10-3 | |
G | 170 ± 10 | 8.8 ± 0.2 | 5.2 | 16,000-fold less | 8.0 × 10-3 | |
T | 140 ± 10 | 1.6 ± 0.0 | 1.2 | 68,000-fold less | 1.9 × 10-3 | |
N2-BzG | C | 21 ± 4 | 270 ± 20 | 1300 | 63-fold less | |
A | 190 ± 30 | 2.1 ± 0.1 | 1.1 | 75,000-fold less | 0.89 × 10-3 | |
G | 120 ± 20 | 2.2 ± 0.1 | 1.8 | 46,000-fold less | 1.4 × 10-3 | |
T | 320 ± 53 | 4.4 ± 0.2 | 1.4 | 59,000-fold less | 1.1 × 10-3 | |
N2-NaphG | C | 5.2 ± 1.0 | 110 ± 3 | 2200 | 37-fold less | |
A | 320 ± 60 | 1.0 ± 0.1 | 0.33 | 248,000-fold less | 1.5 × 10-4 | |
G | 180 ± 20 | 3.8 ± 0.1 | 2.2 | 37,000-fold less | 9.8 × 10-4 | |
T | 120 ± 20 | 1.5 ± 0.1 | 1.3 | 63,000-fold less | 5.6 × 10-4 | |
N2-AnthG | C | 1.3 ± 0.15 | 43 ± 1 | 3200 | 26-fold less | |
A | 360 ± 450 | 0.78 ± 0.03 | 0.21 | 390,000-fold less | 0.67 × 10-4 | |
G | 870 ± 140 | 6.5 ± 0.5 | 0.75 | 109,000-fold less | 2.3 × 10-4 | |
T | 100 ± 10 | 2.3 ± 0.05 | 2.3 | 36,000-fold less | 7.1 × 10-4 |