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. 2008 Oct 30;8:299. doi: 10.1186/1471-2148-8-299

Table 3.

Breakpoint locations

5' part 3' part Entire alignment
Positions in reduced alignment 1–1821 2385–4045 1–4045
Corresponding positions in full alignment 1–2718 3927–6416 1–6416
Number of base/indel characters 2718/148 2490/150 6416/361
Substitution model GTR + Γ GTR + Γ GTR + Γ

Locations of breakpoints between non-recombinant parts of the reduced 4045-bp alignment suggested by GARD, and corresponding positions in the longer alignment. Substitution models were suggested by MrModeltest AIC.