Table 2.
Many features of computer information retrieval process, designed to minimize latency incurrence, are also found in cells. These features, in conjunction with decoupling of steps of the retrieval process, help explain discrepancy in RNA and protein abundance.
Computer | Cell | Potential Discrepancy | |||
---|---|---|---|---|---|
Step | Action | Feature | Action | Feature | |
Storage To Memory | Load | By page | Transcription | Operon; Regulon | Higher RNA level, steady protein level |
Spatial locality: working set | Parallel signaling pathways | ||||
Purge | By page | RNA degradation | Degradation PTRO | Lower RNA level, steady protein level | |
Temporal locality | Parallel degradation pathways | ||||
Memory To Cache | Load | By cache-line | Translation | Translation PTRO | Higher protein level, steady RNA level |
Spatial locality | Parallel signaling pathways | ||||
Purge | By cache-line | Protein degradation | Co-degradation (shared mechanism) | Lower protein level, steady RNA level | |
Temporal locality | Parallel degradation pathways |