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. Author manuscript; available in PMC: 2009 Dec 1.
Published in final edited form as: Comput Biol Chem. 2008 Jul 16;32(6):462–468. doi: 10.1016/j.compbiolchem.2008.07.014

Table 2.

Many features of computer information retrieval process, designed to minimize latency incurrence, are also found in cells. These features, in conjunction with decoupling of steps of the retrieval process, help explain discrepancy in RNA and protein abundance.

Computer Cell Potential Discrepancy
Step Action Feature Action Feature
Storage To Memory Load By page Transcription Operon; Regulon Higher RNA level, steady protein level
Spatial locality: working set Parallel signaling pathways
Purge By page RNA degradation Degradation PTRO Lower RNA level, steady protein level
Temporal locality Parallel degradation pathways
Memory To Cache Load By cache-line Translation Translation PTRO Higher protein level, steady RNA level
Spatial locality Parallel signaling pathways
Purge By cache-line Protein degradation Co-degradation (shared mechanism) Lower protein level, steady RNA level
Temporal locality Parallel degradation pathways