. Author manuscript; available in PMC: 2009 Feb 9.

Published in final edited form as: Genomics. 2007 Jun 4;90(2):225–235. doi: 10.1016/j.ygeno.2007.04.006

Table 3.

Noncoding sequences conserved between the paralogous human SCN1A, SCN2A, and SCN3A genes

CNS	Locus	Location	Length (bp)	% Identity SCN1A/SCN2A	% Identity SCN1A/SCN3A	% Identity SCN2A/SCN3A	Corresponding Orthologous CNS(s)	SCN2A Coordinates
CNSA	SCN1A, 2A, or 3A	5′	393	56	-	-	CNS22	chr2:165,790,680-165,791,073
CNSB^a	SCN1A, 2A, 3A	5′	360	50	51	58	CNS2, 19, 24	chr2:165,804,097-165,804,457
CNSC	SCN1A, 2A, 3A	Intron 5	239	40	40	56	CNS17	chr2:165,874,200-165,874,439
CNSD	SCN1A, 2A	Intron 5	622	44	-	-	CNS16	chr2:165,874,440-165,875,062
CNSE	SCN2A, 3A	Intron 13	247	-	-	51	-	chr2:166,024,067-166,024,314
CNSF	SCN2A, 3A	Intron 16	464	-	-	70	CNS14, 29	chr2:166,039,634-166,040,098

CNS corresponds to noncoding exons: SCN1A exon 1b, SCN2A exon 1a, and SCN3A exon 1a