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. 2003 Oct 28;100(23):13264–13269. doi: 10.1073/pnas.2232255100

Table 3. Number of docked structures remaining after filtering based on 10-Å Cα—Cα distance.

Fragment 10-Å Cα—Cα filter* 10-Å Cα—Cα filter (no. of amides protected) 7-Å heavy atom filter (no. of amides protected)
212—221 (C) 17,466 9,075 (3) 11,026 (3)
247—261 (C) 6,015 1,609 (3) 1,981 (3)
278—289 (C) 2,856 1,087 (1) 1,414 (1)
136—148 (R) 615 158 (2) 356 (2)
222—229 (R) 103 23 (1) 61 (1)
230—238 (R) 96 23 (1) 60 (1)
*

The filter required that at least one Cα from the fragment be within 10 Å of any Cα in the binding partner

The filter required that at least the number of Cα in parentheses from the fragment be within 10 Å of any Cα in the binding partner

The filter required that at least the number of heavy atoms in parentheses from different residues in the fragment be within 7 Å of any heavy atom in the binding partner