Table 1.
Experimental TcUBP1-associated RNAs.
| Description | Transcript name | Systematic name or GenBank Acc. Num. |
| mRNAs | ||
| D-alanyl-glycyl endopeptidase-like protein | ENDO | Tc00.1047053507715.10 |
| Zinc finger protein 1 | ZFP1 | Tc00.1047053511511.6 |
| Ribosomal protein L19 | RPL19 | Tc00.1047053508175.309 |
| Pyruvate dehydrogenase E1 sub. beta | PDH | Tc00.1047053510091.80 |
| Pyruvate dehydrogenase E1 sub. beta (TENS1250) | PDH | Tc00.1047053510421.320 |
| Surface protease GP63 | GP63-1 | Tc00.1047053510747.40 |
| Cytochrome b5 | CYTB5 | Tc00.1047053509395.100 |
| Membrane-associated protein | MAP | Tc00.1047053507795.10 |
| Fatty acid elongase | FAE | Tc00.1047053511245.150 |
| T. cruzi 85-kD surface antigen | GP85 | Tc00.1047053506455.30 |
| Amino acid transporter | AAT | Tc00.1047053511325.25 |
| Myosin-like protein | MYOLP | Tc00.1047053511527.70 |
| Endosomal trafficking protein RME-8 (TENS0888) | RME-8 | Tc00.1047053511511.10 |
| Mucin-like protein SMUG (clone 7.2) | SMUG | Tc00.1047053504539.20 |
| Amastin | AMAS | Tc00.1047053506437.30 |
| Mucin-like protein EMUC (clone e-1a4) | EMUC | Tc00.1047053503761.30 |
| Cysteine proteinase (Cruzipain) | CRUZ | Tc00.1047053509429.320 |
| Trans-sialidase* | TRANS | Tc00.1047053509495.30 |
| Hypothetical protein 1 | HYPO1 | Tc00.1047053506811.120 |
| Hypothetical protein 2 | HYPO2 | Tc00.1047053508015.40 |
| Hypothetical protein 3 | HYPO3 | Tc00.1047053509297.20 |
| Hypothetical protein 4 | HYPO4 | Tc00.1047053508175.90 |
| Hypothetical protein 5 | HYPO5 | Tc00.1047053507085.120 |
| Hypothetical protein 6* | HYPO6 | Tc00.1047053506813.5 |
| Hypothetical protein 7 | HYPO7 | Tc00.1047053511623.10 |
| Hypothetical protein 8 (TENS1110) | HYPO8 | Tc00.1047053507949.250 |
| Hypothetical protein 9 (TENF0687) * | HYPO9 | Tc00.1047053511623.20 |
| Hypothetical protein 10 (TENU0658) | HYPO10 | Tc00.1047053511911.90 |
| Expressed sequence tags (ESTs) | ||
| CB964273 | EST1 | CB964273 |
| TEUF0191 | EST2 | AA433339 |
| TEUF0210 | EST3 | AA676196 |
| SA-7-4 | EST4 | BF299423 |
| TENU3101* | EST5 | AI075507 |
| TENU3771 | EST6 | AI080913 |
| Ribosomal RNA | ||
| 28S ribosomal RNA* | 28S rRNA | L22334 |
| 18S ribosomal RNA (TENQ0845) | 18S rRNA | CF243364 |
| Mitochondrial transcripts | ||
| ATPase subunit 6* | ATPase 6 | DQ343645 |
| Cytochrome oxidase subunit III* | COIII | DQ343645 |
| Cytochrome oxidase subunit III (TEUF0084) | COIII | DQ343645 |
| Cytochrome oxidase subunit III (TcTR-1480) | COIII | DQ343645 |
| NADH dehydrogenase subunit 8 (CB923996) | ND8 | DQ343645 |
| Ribosomal protein S12 (TENF0522) | RPS12 | AA676008 |
List of transcripts sequenced from IP-derived library used to identify putative UBP1 motifs. Excluding rRNAs and mitochondrial transcripts, the total number of clones analyzed was 40, including 32 sequences matching to CDSs and 8 to ESTs. The following cDNA clones were isolated 2 times: ZFP1, PDH, AAT, CRUZ, HYPO3, TEUF0191, and TEUF0210. The remaining sequences were sequenced once. *, not included in the dataset used for motif search.