Table 3. Concordance of degree of methylation of 5′CGI(s) in UCWBC samples and gene expression levels in FPT samples.
Gene Name | tau* | Confidence Interval | p-value |
ACSL3 | −0.45 | [−0.76, −0.15] | <0.01 |
RAD21 | −0.30 | [−0.70, +0.09] | 0.13 |
DUSP22 | −0.31 | [−0.66, +0.05] | 0.09 |
SCD5 | −0.11 | [−0.49, +0.26] | 0.55 |
SFMBT2 | −0.23 | [−0.57, +0.10] | 0.18 |
WWOX | +0.22 | [−0.11, +0.55] | 0.20 |
Note: % of methylated cytosine in the CGI(s) (regions mark as BSPCR in Fig 2) was determined by bisulfite sequencing; levels of gene expression was measured as steady state transcript levels in FPT samples matched to UCWBC samples (n = 14) quantified by real time RT-PCR.
The Kendall tau coefficient was calculated between % of methylation and gene expression; negative sign indicates inverse relationship. The larger the negative value means greater negative correlation and statistical significance was determined by a 2-tailed test with p<0.05.