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. 2008 Dec 12;9(Suppl 12):S8. doi: 10.1186/1471-2105-9-S12-S8

Table 2.

AUC and training time improvement for different models compared to MM1-SVM method for NN269 acceptor splice sites.

Model SVM kernel AUC Training time until convergence (mm.ss) Performance Improvement Time Improvement
MM1 SVM [18] Polynomial 0.9674 11.02 - -

Reduced MM1 SVM (Best in terms of accuracy) GRBF 0.9741 22.17 0.69% -101.96%

Reduced MM1 SVM Polynomial 0.9695 10.48 0.2171% 2.11%

IC Shapiro SVM (Best In terms of Time) Polynomial 0.9628 01:18 -0.4755% 88.21%