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. 2008 Oct 29;10(1):11–23. doi: 10.1093/bib/bbn045

Figure 4:

Figure 4:

(A) Part of BAliBASE reference alignment BB11034, aligned by (B) MAFFT and (C) ProbCons. Secondary structure elements are shown in dark grey (helix) or light grey (β-strand). Boxed regions indicate the alignment core blocks. ProbCons totally misaligned the last sequence (2tmd_A) and the core blocks for this sequence are outside the region shown.