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. 2008 Dec 3;50(1):173–177. doi: 10.1093/pcp/pcn179

Table 1.

Abstract of databases linkable from the KAGIANA tool

Abbreviation Databases URL
TA TAIR (Swarbreck et al. 2008) http://www.arabidopsis.org/
EG Entrez Gene (Maglott et al. 2005) http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene
MP MPSS (Brenner et al. 2000) http://mpss.udel.edu/at/
IP InParanoid (Berglund et al. 2008) http://inparanoid.sbc.su.se/cgi-bin/index.cgi
TD SIGnAL (Alonso et al. 2003) http://signal.salk.edu/cgi-bin/tdnaexpress
SB SUBA (Heazlewood et al. 2007) http://www.plantenergy.uwa.edu.au/applications/suba2/
KG KEGG (Kanehisa et al. 2008) http://www.genome.jp/kegg/
GR GRAMENE (Liang et al. 2008) http://www.gramene.org/
DN NASCArrays Digital Northern (Craigon et al. 2004) http://affymetrix.arabidopsis.info/narrays/digitalnorthern.pl
SH NASCArrays Spot History (Craigon et al. 2004) http://affymetrix.arabidopsis.info/narrays/spothistory.pl
GA Genevestigator Gene Atlas (Zimmermann et al. 2004) https://www.genevestigator.ethz.ch/gv/index.jsp
GC Genevestigator Gene Chronologer (Zimmermann et al. 2004) https://www.genevestigator.ethz.ch/gv/index.jsp
RV Genevestigator Response Viewer (Zimmermann et al. 2004) https://www.genevestigator.ethz.ch/gv/index.jsp
eB eFP Browser (Winter et al. 2007) http://bbc.botany.utoronto.ca/efp/cgi-bin/efpWeb.cgi
AV AtGenExpress Visualization Tool http://jsp.weigelworld.org/expviz/expviz.jsp
AT ATTED-II (Obayashi et al. 2007) http://atted.jp/
AC AraCyc (Zhang et al. 2005) http://www.arabidopsis.org/biocyc/index.jsp
KV KaPPA-View 3 (Sakurai and Shibata 2006) http://kpv.kazusa.or.jp/kappa-view3/
AP AtProteome (Baerenfaller et al. 2008) http://fgcz-atproteome.unizh.ch/