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. 2008 Dec 17;25(3):372–378. doi: 10.1093/bioinformatics/btn640

Table 1.

Network properties and parameter estimations for the beta error rate model with TPL degree distributions

Properties Yeast Worm Fly
Network
    N 1532 729 3639
    Inline graphic 7.65 20.08 14.79
    Inline graphic 2.97 5.55 5.69
    Inline graphic 1.97 3.71 3.57
Parameter
    ɛ 1.61729 0.84128 0.62162
    c 0.00354 0.06187 0.11412
    β1 0.76185 1.39727 0.76634
    β2 9.21670 8.43195 4.26594
    Inline graphic 0.09930 0.13187 0.16999
Estimates
    Inline graphic 4.49 5.02 4.43
    Inline graphic 0.76 2.65 2.51
FNR (%) 51 42 28
FDR per unique interaction (%) 26 48 44
FDR per singleton (%) 39 71 70
Bootstrap wins 96/100 100/100 100/100

N is the number of baits. Inline graphic is the average number of preys sampled per bait, Inline graphic is the average number of unique preys and Inline graphic is the average number of singletons. Inline graphic is the estimated number of preys per bait and Inline graphic is the estimated number of false positives per bait. The FDR per clone (Inline graphic) is Inline graphic, the FDR per unique interaction is Inline graphic and the FDR per singleton is Inline graphic.