Skip to main content
. 2008 Dec 17;9:543. doi: 10.1186/1471-2105-9-543

Table 1.

Different datasets used in the study.

No. Dataset Initial Size Remarks Final set used in the study

Proteins Sites
i PDBBind 1091 One representative ligand of each type is considered in each protein; filtered to remove sites for small and covalently bound ligands; retained proteins common with the SCOP database 786 893

ii PDBBind 1091 Filtered to remove sites for small, covalently bound ligand and all suggested by Jackson and co-workers (10) to contribute to noise; considered sites for all ligand types for the remaining 456 1146

iii Curated dataset of CIT,MTX,MK1 and PGA 27 Ligands for varying sizes and types from PDBBind with multiple sites for a ligand in different proteins 27 51

iv Tetramer 3768 Multiple sites for each ligand in the same protein; filtered to remove small and covalently bound ligands 1525 11301