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. 2009 Feb 12;4(2):e4438. doi: 10.1371/journal.pone.0004438

Table 2. Characteristics of unique nucleotide signatures for 16S rDNA sequences of different Bacillus spp. and clusters of Bacillus sp.

Bacillus spp./Clustera Signature Length (nts)b Frequencyc
Bacillus cereus AAAGTGGAATTCCATGTGTAGCGGTGAAAT 30 151/211
B. thuringiensis ATAACATTTTGAACTGCATGGTTCGAAATT CTTTAGTGCTGAAGTTAACGCATTAAGCA 3029 43/10863/108
B. anthracis No unique signature was detectable 0/153
B. clausii AATCCCATAAAGCCATTCTCAGTTCGGATT AAATGATTGGGGTGAAGTCGTAACAAGGTAAAACCGGAGCTAATACCGGATAATCCCTTT GCATTAGCTAGTTGGTAAGGTAACGGCTTA GTAGTGCCGAAGTTAACACATTAAGCACT 30 30303029 14/39 31/3914/39 15/39 23/39
B. halodurans ATAATAAAAAGAACTGCATGGTTCTTTTTT ACCAAAGGGAGCTTGCTCCTAGAGGTTAGC 3030 21/3601/36
B. pumilus AAGGTTTAGCCAATCCCACAAATCTGTTCT AAGGTTTAGCCAATCCCATAAATCTGTTCT ATAGTTCCTTGAACCGCATGGTTCAAGGAT 303030 14/8336/8342/83
B. megaterium ATGATTGAAAGATGGTTTCGGCTATCACTT AATCCCATAAAACCATTCTCAGTTCGGATT AACTGATTAGAAGCTTGCTTCTATGACGTT TCTTGACATCCTCTGACAACTCTAGAGATA TGGGATAACTTCGGGAAACCGAAGCTAATA 3030303030 36/4719/4728/4733/4734/47
B. sphaericus TAAAACTCTGTTGTAAGGGAAGAACAAGTA ATAGTGGAATTCCAAGTGTAGCGGTGAAAT TAATCCGATAAAGTCGTTCTCAGTTCGGAT AGTAACACGTGGGCAACCTACCTTATAGTT TAACTGGCTGTACCTTGACGGTACCTTATT 3030303030 23/4214/4223/4210/4227/42
B. subtili s No unique signature was detectable 0/211
B. licheniformis No unique signature was detectable 0/131
Bacillus sp. Cluster 1 TAAAACTCTGTTGTAAGGGAAGAACAAGTA AATCCCATAAAACCGTTCCCAGTTCGGAT 3029 19/4605/46
Bacillus sp. Cluster 5 AATCCCATAAATCTATTCTCAGTTCGGATT 30 05/32
Bacillus sp. Cluster 6 AAGCAAATCCCATAAAACCATTCTCAGT TCAAGCAAATCCCATAAAACCATTCTCAGT 2830 09/2307/23
Bacillus sp. Cluster 7 ATAACTCATTTCCTCGCATGAGGAAATGTT 30 10/37
Bacillus sp. Cluster 9 AATCCCATAAAACCACTCTCAGTTCGGATT 30 01/25
Bacillus sp. Cluster 10 AATCCCACAAAACCGTTCCCAGTTCGGATT 30 03/25
Bacillus sp. Cluster 11 TAAACGATGAGTGCTAAGTGTTAGAGGGGT GTCGTAAAGCTCTGTTGTGAGGGACGAAGG 3030 23/5025/50
a

Cluster represent isolates defined only up to genus level Bacillus sp.

b

nucleotides.

c

Frequency of occurrence of the signature out of the total sequences screened.

Out of 11 Clusters, no unique signatures were detectable in Clusters 2, 3, 4 and 8.