Table 2. Characteristics of unique nucleotide signatures for 16S rDNA sequences of different Bacillus spp. and clusters of Bacillus sp.
Bacillus spp./Clustera | Signature | Length (nts)b | Frequencyc |
Bacillus cereus | AAAGTGGAATTCCATGTGTAGCGGTGAAAT | 30 | 151/211 |
B. thuringiensis | ATAACATTTTGAACTGCATGGTTCGAAATT CTTTAGTGCTGAAGTTAACGCATTAAGCA | 3029 | 43/10863/108 |
B. anthracis | No unique signature was detectable | 0/153 | |
B. clausii | AATCCCATAAAGCCATTCTCAGTTCGGATT AAATGATTGGGGTGAAGTCGTAACAAGGTAAAACCGGAGCTAATACCGGATAATCCCTTT GCATTAGCTAGTTGGTAAGGTAACGGCTTA GTAGTGCCGAAGTTAACACATTAAGCACT | 30 30303029 | 14/39 31/3914/39 15/39 23/39 |
B. halodurans | ATAATAAAAAGAACTGCATGGTTCTTTTTT ACCAAAGGGAGCTTGCTCCTAGAGGTTAGC | 3030 | 21/3601/36 |
B. pumilus | AAGGTTTAGCCAATCCCACAAATCTGTTCT AAGGTTTAGCCAATCCCATAAATCTGTTCT ATAGTTCCTTGAACCGCATGGTTCAAGGAT | 303030 | 14/8336/8342/83 |
B. megaterium | ATGATTGAAAGATGGTTTCGGCTATCACTT AATCCCATAAAACCATTCTCAGTTCGGATT AACTGATTAGAAGCTTGCTTCTATGACGTT TCTTGACATCCTCTGACAACTCTAGAGATA TGGGATAACTTCGGGAAACCGAAGCTAATA | 3030303030 | 36/4719/4728/4733/4734/47 |
B. sphaericus | TAAAACTCTGTTGTAAGGGAAGAACAAGTA ATAGTGGAATTCCAAGTGTAGCGGTGAAAT TAATCCGATAAAGTCGTTCTCAGTTCGGAT AGTAACACGTGGGCAACCTACCTTATAGTT TAACTGGCTGTACCTTGACGGTACCTTATT | 3030303030 | 23/4214/4223/4210/4227/42 |
B. subtili s | No unique signature was detectable | 0/211 | |
B. licheniformis | No unique signature was detectable | 0/131 | |
Bacillus sp. Cluster 1 | TAAAACTCTGTTGTAAGGGAAGAACAAGTA AATCCCATAAAACCGTTCCCAGTTCGGAT | 3029 | 19/4605/46 |
Bacillus sp. Cluster 5 | AATCCCATAAATCTATTCTCAGTTCGGATT | 30 | 05/32 |
Bacillus sp. Cluster 6 | AAGCAAATCCCATAAAACCATTCTCAGT TCAAGCAAATCCCATAAAACCATTCTCAGT | 2830 | 09/2307/23 |
Bacillus sp. Cluster 7 | ATAACTCATTTCCTCGCATGAGGAAATGTT | 30 | 10/37 |
Bacillus sp. Cluster 9 | AATCCCATAAAACCACTCTCAGTTCGGATT | 30 | 01/25 |
Bacillus sp. Cluster 10 | AATCCCACAAAACCGTTCCCAGTTCGGATT | 30 | 03/25 |
Bacillus sp. Cluster 11 | TAAACGATGAGTGCTAAGTGTTAGAGGGGT GTCGTAAAGCTCTGTTGTGAGGGACGAAGG | 3030 | 23/5025/50 |
Cluster represent isolates defined only up to genus level Bacillus sp.
nucleotides.
Frequency of occurrence of the signature out of the total sequences screened.
Out of 11 Clusters, no unique signatures were detectable in Clusters 2, 3, 4 and 8.