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Journal of Clinical Microbiology logoLink to Journal of Clinical Microbiology
. 1994 Dec;32(12):2959–2961. doi: 10.1128/jcm.32.12.2959-2961.1994

Genetic diversity in human-derived Pneumocystis carinii isolates from four geographical locations shown by analysis of mitochondrial rRNA gene sequences.

A E Wakefield 1, C C Fritscher 1, A S Malin 1, L Gwanzura 1, W T Hughes 1, R F Miller 1
PMCID: PMC264207  PMID: 7533779

Abstract

The opportunistic fungal pathogen Pneumocystis carinii is a frequent cause of pneumonia in immunocompromised hosts. In this study, we have compared the DNA sequences of a portion of the mitochondrial large-subunit rRNA gene of P. carinii (an informative locus showing up to 27% differences among isolates of P. carinii from human-, rat-, mouse-, ferret-, rabbit-, and horse-infected lungs) obtained from human-derived isolates from widely disparate geographical areas, including Britain, the United States, Brazil, and Zimbabwe. A single-base polymorphism which varied among samples was identified. Apart from this nucleotide, the DNA sequences of all samples were identical. The sequences of the British samples were shown to be stable over a period of 4 years. These data suggest that there is relatively low genetic diversity among isolates of human-derived P. carinii from different global regions.

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Selected References

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  1. Cushion M. T., Kaselis M., Stringer S. L., Stringer J. R. Genetic stability and diversity of Pneumocystis carinii infecting rat colonies. Infect Immun. 1993 Nov;61(11):4801–4813. doi: 10.1128/iai.61.11.4801-4813.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Cushion M. T., Zhang J., Kaselis M., Giuntoli D., Stringer S. L., Stringer J. R. Evidence for two genetic variants of Pneumocystis carinii coinfecting laboratory rats. J Clin Microbiol. 1993 May;31(5):1217–1223. doi: 10.1128/jcm.31.5.1217-1223.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Dyer M., Volpe F., Delves C. J., Somia N., Burns S., Scaife J. G. Cloning and sequence of a beta-tubulin cDNA from Pneumocystis carinii: possible implications for drug therapy. Mol Microbiol. 1992 Apr;6(8):991–1001. doi: 10.1111/j.1365-2958.1992.tb02165.x. [DOI] [PubMed] [Google Scholar]
  4. Edlind T. D., Bartlett M. S., Weinberg G. A., Prah G. N., Smith J. W. The beta-tubulin gene from rat and human isolates of Pneumocystis carinii. Mol Microbiol. 1992 Nov;6(22):3365–3373. doi: 10.1111/j.1365-2958.1992.tb02204.x. [DOI] [PubMed] [Google Scholar]
  5. Gigliotti F., Harmsen A. G., Haidaris C. G., Haidaris P. J. Pneumocystis carinii is not universally transmissible between mammalian species. Infect Immun. 1993 Jul;61(7):2886–2890. doi: 10.1128/iai.61.7.2886-2890.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Gutell R. R., Schnare M. N., Gray M. W. A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures. Nucleic Acids Res. 1992 May 11;20 (Suppl):2095–2109. doi: 10.1093/nar/20.suppl.2095. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Hong S. T., Kim B. I., Kho W. G., Yu J. R., Kook J., Chai J. Y., Yun C. K., Lee S. H. Karyotypes of Pneumocystis carinii from Korean rats. Kisaengchunghak Chapchi. 1992 Sep;30(3):183–189. doi: 10.3347/kjp.1992.30.3.183. [DOI] [PubMed] [Google Scholar]
  8. Kovacs J. A., Powell F., Edman J. C., Lundgren B., Martinez A., Drew B., Angus C. W. Multiple genes encode the major surface glycoprotein of Pneumocystis carinii. J Biol Chem. 1993 Mar 15;268(8):6034–6040. [PubMed] [Google Scholar]
  9. Lee C. H., Lu J. J., Bartlett M. S., Durkin M. M., Liu T. H., Wang J., Jiang B., Smith J. W. Nucleotide sequence variation in Pneumocystis carinii strains that infect humans. J Clin Microbiol. 1993 Mar;31(3):754–757. doi: 10.1128/jcm.31.3.754-757.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Liu Y., Leibowitz M. J. Variation and in vitro splicing of group I introns in rRNA genes of Pneumocystis carinii. Nucleic Acids Res. 1993 May 25;21(10):2415–2421. doi: 10.1093/nar/21.10.2415. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Liu Y., Rocourt M., Pan S., Liu C., Leibowitz M. J. Sequence and variability of the 5.8S and 26S rRNA genes of Pneumocystis carinii. Nucleic Acids Res. 1992 Jul 25;20(14):3763–3772. doi: 10.1093/nar/20.14.3763. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Peters S. E., Wakefield A. E., Whitwell K. E., Hopkin J. M. Pneumocystis carinii pneumonia in thoroughbred foals: identification of a genetically distinct organism by DNA amplification. J Clin Microbiol. 1994 Jan;32(1):213–216. doi: 10.1128/jcm.32.1.213-216.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Sinclair K., Wakefield A. E., Banerji S., Hopkin J. M. Pneumocystis carinii organisms derived from rat and human hosts are genetically distinct. Mol Biochem Parasitol. 1991 Mar;45(1):183–184. doi: 10.1016/0166-6851(91)90042-5. [DOI] [PubMed] [Google Scholar]
  15. Smulian A. G., Sullivan D. W., Linke M. J., Halsey N. A., Quinn T. C., MacPhail A. P., Hernandez-Avila M. A., Hong S. T., Walzer P. D. Geographic variation in the humoral response to Pneumocystis carinii. J Infect Dis. 1993 May;167(5):1243–1247. doi: 10.1093/infdis/167.5.1243. [DOI] [PubMed] [Google Scholar]
  16. Stringer J. R., Stringer S. L., Zhang J., Baughman R., Smulian A. G., Cushion M. T. Molecular genetic distinction of Pneumocystis carinii from rats and humans. J Eukaryot Microbiol. 1993 Nov-Dec;40(6):733–741. doi: 10.1111/j.1550-7408.1993.tb04468.x. [DOI] [PubMed] [Google Scholar]
  17. Stringer J. R. The identity of Pneumocystis carinii: not a single protozoan, but a diverse group of exotic fungi. Infect Agents Dis. 1993 Jun;2(3):109–117. [PubMed] [Google Scholar]
  18. Stringer S. L., Garbe T., Sunkin S. M., Stringer J. R. Genes encoding antigenic surface glycoproteins in Pneumocystis from humans. J Eukaryot Microbiol. 1993 Nov-Dec;40(6):821–826. doi: 10.1111/j.1550-7408.1993.tb04481.x. [DOI] [PubMed] [Google Scholar]
  19. Wakefield A. E., Guiver L., Miller R. F., Hopkin J. M. DNA amplification on induced sputum samples for diagnosis of Pneumocystis carinii pneumonia. Lancet. 1991 Jun 8;337(8754):1378–1379. doi: 10.1016/0140-6736(91)93062-e. [DOI] [PubMed] [Google Scholar]
  20. Wakefield A. E., Peters S. E., Banerji S., Bridge P. D., Hall G. S., Hawksworth D. L., Guiver L. A., Allen A. G., Hopkin J. M. Pneumocystis carinii shows DNA homology with the ustomycetous red yeast fungi. Mol Microbiol. 1992 Jul;6(14):1903–1911. doi: 10.1111/j.1365-2958.1992.tb01363.x. [DOI] [PubMed] [Google Scholar]
  21. Wakefield A. E., Pixley F. J., Banerji S., Sinclair K., Miller R. F., Moxon E. R., Hopkin J. M. Amplification of mitochondrial ribosomal RNA sequences from Pneumocystis carinii DNA of rat and human origin. Mol Biochem Parasitol. 1990 Nov;43(1):69–76. doi: 10.1016/0166-6851(90)90131-5. [DOI] [PubMed] [Google Scholar]
  22. Wakefield A. E., Pixley F. J., Banerji S., Sinclair K., Miller R. F., Moxon E. R., Hopkin J. M. Detection of Pneumocystis carinii with DNA amplification. Lancet. 1990 Aug 25;336(8713):451–453. doi: 10.1016/0140-6736(90)92008-6. [DOI] [PubMed] [Google Scholar]

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