Table 1.
Mismatch designs
DESIGN | # MMs | MM BASE LOCATIONS |
PM | 0 | -- |
Centered | ||
c1 | 1 | 18 |
c3 | 3 | 17–19 |
c5 | 5 | 16–20 |
c7 | 7 | 15–21 |
c9 | 9 | 14–22 |
c11 | 11 | 13–23 |
Staggered | ||
s2 | 2 | 12, 24 |
s3 | 3 | 12, 18, 24 |
s4 | 4 | 6, 12, 18, 14 |
s5 | 5 | 6, 12, 18, 24, 30 |
s7 | 7 | 6, 12, 15, 18, 21, 24, 30 |
Design of mismatch oligo classes: SingleCenter (c1), centered (c2-c11) and staggered (s2-s7).