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. 2008 Dec 31;9:635. doi: 10.1186/1471-2164-9-635

Table 1.

Mismatch designs

DESIGN # MMs MM BASE LOCATIONS
PM 0 --

Centered

c1 1 18
c3 3 17–19
c5 5 16–20
c7 7 15–21
c9 9 14–22
c11 11 13–23

Staggered

s2 2 12, 24
s3 3 12, 18, 24
s4 4 6, 12, 18, 14
s5 5 6, 12, 18, 24, 30
s7 7 6, 12, 15, 18, 21, 24, 30

Design of mismatch oligo classes: SingleCenter (c1), centered (c2-c11) and staggered (s2-s7).