Table 1.
Discovery tests of rs1799990 and four novel candidate SNPs in patients with vCJD and UK controls
| Chromosome | Locus | Minor allele | Major allele | vCJD genotypes | UK control genotypes | Model | p (vCJD) | OR | |
|---|---|---|---|---|---|---|---|---|---|
| rs1799990 | 20 | 4628251 | G | A | 119/0/0 | 294/324/81 | A | 2·0×10−27 | .. |
| rs6107516 | 20 | 4625092 | A | G | 117/2/0 | 1960/1227/227 | A | 2·5×10−17 | 38·5 (9·6–155·2) |
| rs6116492 | 20 | 4646626 | T | G | 104/12/1 | 2979/104/0 | A | 8·2×10−5 | 3·71 (2·09–6·59) |
| rs1460163 | 8 | 80390003 | A | G | 7/25/86 | 31/657/2734 | R | 5·6×10−5 | 6·9 (3·0–16·0) |
| rs6794719 | 3 | 24777543 | T | A | 3/31/84 | 346/1465/1596 | A | 1·9×10−7 | 2·5 (1·7–3·7) |
Genetic models: A=allelic; G=genotypic.