Table 2.
Summary of MS/MS spectra, proteins and peptides included in the H. salinarum NRC-1 PeptideAtlas.
| Number of experimentsa | 88 |
| Number of MS runs | 497 |
| Number of MS/MS spectra | 636,300 |
| Number of MS/MS spectra searchedb | 539,950 |
| Number of MS/MS spectra above P=0.9 threshold | 76,212 |
| Number of distinct peptides in P>0.9 PeptideAtlas | 12,316 |
| Number of distinct peptides aligned to reference genome | 11,960 |
| Number of proteins or ORFs in reference genome | 2,627 |
| Number of proteins or ORFs detected in P>0.9 PeptideAtlas | 1,646 (62.7%) |
a
includes experiments of all types as listed in Figure 2.
b
∼96,000 poor-quality spectra were excluded from SEQUEST search.