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. 2008 Dec 16;75(4):956–964. doi: 10.1128/AEM.01411-08

TABLE 3.

Sequencing results from collected peaks (FS) or cloned fragments derived from CT and SL and their relationship to sequences in the databasea

Sample type and ID or cloneb RT % GC Length (bp) Closest relative % Identity
FS
    F3-2 2.58 227 Uncultured euryarchaeote gene 99
    Fcm12 12.60 496 Methanosarcina siciliae 98
    Fcm15 13.77 478 Clostridium sp. 98
    F3-4 14.01 369 Uncultured euryarchaeote gene 100
    Fa4 14.25 227 Uncultured euryarchaeote gene 99
    Fa6 14.25 227 Uncultured euryarchaeote gene 99
    F3-8 14.56 496 No significant results
    F17m13 15.02 421 Uncultured bacterium clone M55_D21_H_B_A08 97
    F3-2-13 16.95 751 Uncultured euryarchaeote isolate DGGE band 672729-MODIFIZIERT 93
    F3-2-14 16.95 488 M. thermoformicicum (SF-4) 88
    FA1 17.27 369 Uncultured euryarchaeote gene 96
    FA3 17.27 369 Uncultured euryarchaeote gene 100
    F23m 17.38 372 Uncultured euryarchaeote gene 99
CT
    KA002 4.48 55.3 474 Uncultured Flavobacterium sp. clone Y17 98
    KA030 15.26 55.9 478 Uncultured organism clone ctg_NISA060 98
    KA039 14.35 58.9 474 Uncultured bacterium clone PC-PA9-4 98
    KA061 11.80 54.6 478 Uncultured bacterium clone l_E07 97
    KB010 10.95 493 Uncultured archaeon gene 97
    KB024 12.29 56.1 483 Uncultured archaeon gene 98
    KB029 15.07 56.3 478 Alphaproteobacterium JL1032 98
    KB051 15.97 57.2 479 Bacillus sp. enrichment culture clone 866 ECW 19 91
    KB073 11.03 57.5 494 Uncultured archaeon gene 100
    KB104 11.77 56.7 494 Methanoculleus thermophilus strain JB-1 16S 99
    KB126 16.76 53.3 483 Streptomyces marokkonensis strain 174443 99
    KB165 19.22 57.3 496 Uncultured archaeon gene 98
    KC009 12.91 53.9 498 Uncultured archaeon gene 96
    KC035 19.25 60.0 493 Uncultured bacterium clone 101-114 98
    KC090 12.46 57.3 494 Uncultured archaeon gene 99
    KC128 2.52 55.6 444 Uncultured bacterium clone EPR3967-O2-Bc72 94
    KE033 3.00 60.0 493 Uncultured bacterium clone 101-114 98
    KE169 19.22 60.7 476 Uncultured bacterium clone C6B 96
SL
    B008 16.10 56.7 499 Uncultured planctomycete clone Amb_16S_1421 96
    B009 13.76 57.2 493 Uncultured crenarchaeote 03_12a 99
    B014 13.44 55.8 493 Uncultured crenarchaeote clone OdenE-150iia 99
    B018 14.17 56.1 476 Uncultured soil bacterium clone 169-2 98
    B024 17.00 55.1 477 Uncultured proteobacterium clone Elev_16S_1449 98
    B032 17.64 57.5 475 Unidentified bacterium clone 61_H_RHIZO_H1_T7s 98
    B043 29.50 60.2 455 Uncultured bacterium gene 96
    B046 18.91 56.0 479 Uncultured bacterium clone NR.1.037 97
    B103 15.64 57.2 479 Uncultured bacterium gene 99
    B104 16.13 55.6 478 Uncultured bacterium clone FCPT661 99
    B105 16.89 57.1 476 Acidobacteria bacterium Ellin7137 99
    B111 13.26 56.2 495 Uncultured archaeon clone COSAS-F3 99
    B119 17.27 56.7 476 Uncultured Verrucomicrobia bacterium clone 172 99
    B121 13.42 56.0 480 Uncultured bacterium clone C55_D6_H_B_C12 93
    B123 18.19 59.3 492 Uncultured euryarchaeote 03_27e 99
    B127 13.74 57.6 496 Uncultured crenarchaeote 03_02a 99
    B133 13.14 56.2 495 Uncultured crenarchaeote 03_06c 100
    B143 17.74 56.3 476 Uncultured bacterium clone P1mB_062 100
    B144 22.55 59.3 474 Uncultured proteobacterium clone Amb_16S_520 100
    B150 12.88 57.7 494 Uncultured archaeon gene 99
    B151 16.20 55.9 483 Uncultured bacterium clone BacB_007 99
    B158 16.97 57.4 476 Uncultured alphaproteobacterium clone KF002 97
    B161 20.63 60.1 494 Uncultured crenarchaeote 12_30a 99
    B162 18.95 56.8 477 Uncultured bacterium clone BacC-u_010 95
    B168 17.38 57.1 476 Uncultured alphaproteobacterium clone FI-2M_B06 99
    B169 12.95 56.2 495 Uncultured crenarchaeote clone OdenB-100iib 99
    B171 11.13 54.6 476 Uncultured proteobacterium clone Amb 99
    B172 12.74 57.3 494 Uncultured archaeon gene 99
    B175 20.01 57.5 475 Uncultured bacterium clone M55_D21_H_B_F10 99
    B177 18.17 57.1 478 Uncultured Holophaga sp. 100
    B178 17.62 57.5 477 Uncultured bacterium clone Elev_16S _1673 100
    B179 12.39 54.8 476 Uncultured bacterium clone TSC176 99
    B180 19.12 59.7 494 Uncultured crenarchaeote 12_30a 99
    B190 17.20 57.4 477 Uncultured bacterium clone FCPO684 99
    B191 12.18 52.7 474 Uncultured bacterium clone FCPS486 99
    B205 11.45 55.9 494 Uncultured archaeon gene 98
    B206 12.10 57.1 494 Uncultured archaeon gene 99
    B207 13.01 476 Uncultured soil bacterium clone 169-2 98
    B212 14.94 57.9 496 Uncultured archaeon clone NAK1-a2 97
    B217 13.22 57.5 494 Uncultured archaeon clone GW70-20-11 16S 100
    B218 16.29 58.6 495 Uncultured crenarchaeote clone E11_ARCH1 98
    B220 17.53 57.6 479 Uncultured alphaproteobacterium clone EB1049 100
    B226 12.76 55.3 474 Galbibacter mesophilus gene 98
    B229 16.28 57.0 474 Rhizobiales bacterium Mfc52 gene 100
    B233 13.90 54.8 478 Uncultured alphaproteobacterium clone lhap30 99
    B238 18.39 57.7 477 Uncultured Acidobacteria bacterium clone E05_WMSP1 98
    B239 10.40 51.6 479 Uncultured Bacteroidetes bacterium clone AKYG516 98
    B244 16.86 57.4 479 Uncultured Hyphomicrobiaceae bacterium clone Elev_16S_1015 100
    B245 17.08 58.2 478 Uncultured soil bacterium clone S013 100
    B260 11.63 54.0 469 Uncultured archaeon isolate DGGE band 672730-MODIFIZIERT 87
    B261 26.29 57.2 954 No significant result
    B288 17.61 56.0 495 Uncultured archaeon clone COSAS-F3 16S 100
a

A total of 208 clones were collected for CT in different time windows, and 289 were collected for SL.

b

FS, CT, and SL sample types are represented. The identification (ID) is given for the FS samples; the clone is specified for the CT and SL samples.