TABLE 4.
Genes upregulated at 30 min after induction in cells germinating in the presence of adenine or potassium relative to their expression in cells germinating in nutrient medium
| Clone ID | Best alignment (Swiss-Prot); description | GO description | A ratioa | K ratiob |
|---|---|---|---|---|
| BeE90N01D10 | Q9Y823; probable homocitrate synthase, mitochondrial | Amino acid biosynthesis | 1.83 | 1.87 |
| BeE30N06E01 | Q34DS8; amino acid permease-associated region | Amino acid transport | 2.36 | 2.21 |
| BeE120N01A01 | Q3RIG0; amino acid permease-associated region | Amino acid transport | 1.10 | 1.13 |
| BeG30N13H09 | Q3WZJ7; amino acid permease-associated region | Amino acid transport | 1.97 | 1.90 |
| BeE30N10F07 | Q440D2; amino acid permease-associated region precursor | Amino acid transport | 1.76 | 1.83 |
| BeG60N01F09 | Q4WZ19; high affinity methionine permease | Amino acid transport | 1.30 | 0.97 |
| BeE120N09C08 | Q8P9N1; cationic amino acid transporter | Amino acid transport | 0.77 | 0.84 |
| BeE60H21G09 | Q8PLF9; cationic amino acid transporter | Amino acid transport | 2.01 | 2.21 |
| BeZSPN17H06 | O06479; YfnA | Amino acid transport | 2.96 | 2.84 |
| BeG30N15D05 | Q2SCN2; carbonic anhydrase | Carbon utilization | 0.694 | 1.81 |
| BeE30N14D03 | Q7ZUY3; histone H2A.x | Chromosome organization and biogenesis | 1.62 | 1.14 |
| BeE60H06B09 | Q4PEF9; H2A_NEUCR histone H2A | Chromosome organization and biogenesis | 1.83 | 1.25 |
| BeZSPN03D06 | Q9HDN1; histone H3 | Chromosome organization and biogenesis | 1.61 | 0.88 |
| BeE30N02C10 | Q4P7J7; H3_EMENI histone H3 | Chromosome organization and biogenesis | 2.13 | 1.31 |
| BeZSPN11B02 | Q2UFJ0; histone H4 | Chromosome organization and biogenesis | 2.01 | 1.24 |
| BeG90N18F10 | Q8SZ87; RE13747p | Mitosis | 1.04 | 1.02 |
| BeE60N03D06 | Q4WJ09; putative ketoreductase | Oxidation reduction | 1.75 | 0.95 |
| BeE60C17C02 | P38356; metal homeostatis protein BSD2 | Cation transport | 1.72 | 1.15 |
| BeZSPN09E08 | Q7Z8B6; H+-ATPase | Proton transport | 0.778 | 0.631 |
| BeZSPN10H02 | Q7RW00; hypothetical protein | Electron transport | 1.56 | 1.48 |
| BeE60N09D01 | Q2S1W1; acyl-coenzyme A oxidase I, putative | Oxidoreductase activity | 1.43 | 1.12 |
| BeZSPN14D10 | O93787; Chs3 | Transferase activity | 1.20 | 0.724 |
| BeZSPN02F03 | Q96338; AMP-binding protein | Fatty acid metabolism | 1.45 | 1.13 |
| BeE60N19B01 | Q95R88; SD01152p | Fatty acid metabolism | 2.00 | 1.01 |
| BeG3-0N06H02 | O74879; SPCC330.09 protein | rRNA processing | 1.41 | 1.42 |
| BeG30N09H07 | Q5KN22; ubiquitin-conjugating enzyme E2 | Ubiquitin cycle | 0.84 | 0.858 |
a
Log2 of the normalized expression ratios for cells germinating in adenine compared to cells germinating in nutrient medium.
b
Log2 of the normalized expression ratios for cells germinating in potassium compared to cells germinating in nutrient medium.