TABLE 4.
Sequence identity matrix and percentages of GC content corresponding to the region of nt 301 to 890 of the FAdV-1 CELO genes for hexon proteinsa
| FAdV serotype (strain) | % Identity with FAdV serotype (strain):
|
GC content (%) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 (CELO) | 2 (SR48) | 3 (SR49) | 4 (KR5) | 5 (340) | 6 (CR119) | 7 (YR36) | 8a (TR59) | 8b (764) | 9 (A02) | 10 (C2B) | 11 (UF71) | ||
| 1 (CELO) | ID | 58.0 | |||||||||||
| 2 (SR48) | 40.7 | ID | 54.0 | ||||||||||
| 3 (SR49) | 44.9 | 69.6 | ID | 51.9 | |||||||||
| 4 (KR5) | 56.2 | 29.2 | 29.8 | ID | 58.8 | ||||||||
| 5 (340) | 42.5 | 45.7 | 48.6 | 40.6 | ID | 55.2 | |||||||
| 6 (CR119) | 43.7 | 63.1 | 59.9 | 37.3 | 55.1 | ID | 56.4 | ||||||
| 7 (YR36) | 44.0 | 58.6 | 56.9 | 38.6 | 54.6 | 84.5 | ID | 56.2 | |||||
| 8a (TR59) | 40.5 | 58.9 | 53.4 | 38.1 | 53.6 | 79.7 | 80.4 | ID | 57.2 | ||||
| 8b (764) | 38.3 | 56.3 | 56.2 | 31.7 | 48.0 | 77.6 | 87.3 | 77.5 | ID | 54.0 | |||
| 9 (A02) | 43.2 | 70.6 | 94.9 | 30.3 | 47.3 | 58.8 | 56.9 | 51.3 | 55.6 | ID | 51.4 | ||
| 10 (C2B) | 56.0 | 29.5 | 30.5 | 95.3 | 40.5 | 37.3 | 38.2 | 38.8 | 32.0 | 31.9 | ID | 58.7 | |
| 11 (UF71) | 41.2 | 99.0 | 70.3 | 28.6 | 46.0 | 62.4 | 57.3 | 58.6 | 55.9 | 70.8 | 28.0 | ID | 53.6 |
a
The FAdV-1 CELO genes for hexon proteins are assigned GenBank accession number Z67970, nt 1380 to 4208 (1) (Hex L1 PRC product). The matrix was calculated using the DNAdist program in BioManager, with the Kimura distance method, and GC contents were calculated using BioEdit Sequence Alignment Editor. ID, identical.