Table 1.
SNP (region) | Genotype | Genotype frequencies | Allele | Allele frequencies | Allele carriage |
Rs2075507* | AA | 0.26 | A | 0.53 | 0.80 |
(promoter) | AG | 0.54 | G | 0.47 | 0.74 |
GG | 0.20 | ||||
Rs737866 | AA | 0.61 | A | 0.78 | 0.94 |
(intron 1) | AG | 0.33 | G | 0.22 | 0.39 |
GG | 0.06 | ||||
Rs7287550 | CC | 0.53 | C | 0.72 | 0.91 |
(intron 1) | CT | 0.38 | T | 0.28 | 0.47 |
TT | 0.09 | ||||
Rs5746849 | GG | 0.18 | G | 0.43 | 0.68 |
(intron 1) | GA | 0.49 | A | 0.57 | 0.82 |
AA | 0.33 | ||||
Rs740603 | AA | 0.31 | A | 0.56 | 0.81 |
(intron 1) | AG | 0.50 | G | 0.44 | 0.69 |
GG | 0.19 | ||||
Rs6269 | AA | 0.40 | A | 0.62 | 0.84 |
(intron 2) | AG | 0.44 | G | 0.38 | 0.60 |
GG | 0.16 | ||||
Rs2239393 | AA | 0.40 | A | 0.62 | 0.84 |
(intron 3) | AG | 0.44 | G | 0.38 | 0.59 |
GG | 0.16 | ||||
Rs4818 | CC | 0.41 | C | 0.63 | 0.84 |
(exon 4) | CG | 0.43 | G | 0.37 | 0.59 |
GG | 0.16 | ||||
Rs4680 (Val158Met) | GG | 0.22 | G | 0.44 | 0.66 |
(exon 4) | GA | 0.44 | A | 0.56 | 0.78 |
AA | 0.34 | ||||
Rs174699 | CT | 0.09 | C | 0.04 | 0.09 |
(intron 5) | TT | 0.91 | T | 0.96 | 100.0 |
Rs165728 | CT | 0.10 | C | 0.05 | 0.10 |
(untranslated region) | TT | 0.90 | T | 0.95 | 100.0 |
* Rs2075507 has recently been revised, earlier SNP number was Rs2097603