Table 1.

Mouse CPM locus transcripts defined by bioinformatics analysis

		Number of supporting sequences					CPC
Transcript	DNA strand	Total	Unique cDNA	Spliced cDNA	CAGE	Size (bp)	coding potential	score
01	Sense	53#	31	52	3¥	5195	Strong	6.01
02	Sense	9	3	3	3¥	798	Weak	0.48
03	Sense	2	2	0	0	391	No	-1.28
04	Sense	7	0	?	7	?	?	?
05	Sense	2	2	0	0	408	No	-1.09
06 *	Sense	6	0	3	3	652	Strong	3.70
07	Sense	4	4	0	0	1900	Weak	0.37
08 *	Sense	5	0	2	3	1014	Strong	3.52
09	Sense	2	2	0	0	548	No	-1.05
10	Sense	7	3	7	0	2007	Strong	1.73
11	Sense	4	4	0	0	1125	No	-1.15
12	Sense	1	0	?	1	?	?	?
13	Sense	2	0	?	2	?	?	?
14	Sense	1	0	?	1	?	?	?
15	Sense	1	0	?	1	?	?	?
16 *	Sense	2	0	1	1	502	Strong	2.68
17	Sense	2	0	?	2	?	?	?
18	Sense	1	1	0	0	332	No	-1.35
19	Sense	1	0	?	1	?	?	?
20 *	Sense	4	0	4	0	890	Strong	2.79
21 *	Sense	2	0	2	0	547	Strong	1.84
22 *	Sense	1	0	?	1	?	?	?
23 *	Sense	1	0	?	1	?	?	?
24 *	Sense	2	0	?	2	?	?	?
25 *	Sense	1	0	?	1	?	?	?
26 *	Anti-sense	1	0	?	1	?	?	?
27	Anti-sense	1	1	0	0	492	Weak	0.02
28	Anti-sense	1	1	0	0	468	No	-1.11
29	Anti-sense	1	0	?	1	?	?	?
30	Anti-sense	1	0	?	1	?	?	?
31	Anti-sense	4	0	?	4	?	?	?
32	Anti-sense	1	1	0	0	662	No	-1.27
33	Anti-sense	1	0	?	1	?	?	?
34	Anti-sense	1	1	0	0	668	No	-1.28
Undefined&	Both	124	124	0	5	N/A	N/A	N/A

* Transcripts totally included in the mCPM-T01.

^&Non-spliced cDNAs that map in the last exon of mouse CPM gene and probably represent independent transcripts.

^#Not including the cDNAs that map to the last exon.

^¥ Can be supportive of mCPM-T01 or mCPM-T02.

? = Not enough information to conclude. N/A = not applicable.