Table 1.
Frequency of compound microsatellites in the whole genome and in the coding sequence (cds).
| whole genome | coding sequence | |||||||||||
| species | m.1 | c.2 | cSSR3 | %4 | m.d.5 | c.d.6 | m.1 | c.2 | cSSR3 | %4 | m.d.5 | c.d.6 |
| H. sap. | 1 169 530 | 59 792 | 129 848 | 11.1 | 413.0 | 21.1 | 4 965 | 104 | 233 | 4.7 | 77.4 | 1.6 |
| M. mul. | 1 178 381 | 61 407 | 134 455 | 11.4 | 445.3 | 23.2 | 3 638 | 64 | 139 | 3.8 | 71.3 | 1.3 |
| M. mus. | 1 574 180 | 173 535 | 398 361 | 25.3 | 617.9 | 68.1 | 3 995 | 95 | 202 | 5.1 | 72.5 | 1.7 |
| R. nor. | 1 307 474 | 133 120 | 291 304 | 22.3 | 527.8 | 53.7 | 1 883 | 92 | 226 | 12.0 | 92.6 | 4.5 |
| O. anat. | 133 984 | 1 913 | 3 969 | 3.0 | 327.2 | 4.7 | 1 535 | 16 | 34 | 2.2 | 42.8 | 0.5 |
| G. gal. | 233 896 | 8 532 | 17 989 | 7.7 | 237.5 | 8.7 | 1 889 | 36 | 77 | 4.1 | 58.3 | 1.1 |
| D. rerio | 1 048 258 | 94 159 | 225 069 | 21.5 | 688.1 | 61.8 | 3215 | 86 | 180 | 5.6 | 72.0 | 1.9 |
| D. mel. | 44 600 | 714 | 1 457 | 3.3 | 376.9 | 6.0 | 4 168 | 105 | 213 | 5.1 | 145.6 | 3.7 |
1total number of microsatellites in DNA sequence space
2total number of compound microsatellites in DNA sequence space
3number of individual microsatellites being part of a compound microsatellite
4percentage of individual microsatellites being part of a compound microsatellite (cSSR-%)
5microsatellite density [m./Mbp]
6compound microsatellite density [c./Mbp]
H. sap.: Homo sapiens; M. mul.: Macaca mulatta; M. mus.: Mus musculus; R. nor.: Rattus norvegicus; O. anat.: Ornithorhynchus anatinus; G. gal.: Gallus gallus; D. rerio: Danio rerio; D. mel.: