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. 2009 Feb;10(2):133–141. doi: 10.1631/jzus.B0820183

Table 2.

Number of bands, polymorphism information content, resolving power, and mean genetic similarity revealed by each of the 17 primers in 12 rice varieties

No. Primer No. PS* nbp npl nb rb/a rb/l PIC Rp MGS
(AG)n-based primers
1 807 (AG)8T 21 17 156 13.00 7.43 0.52 9.0 0.74
2 808 (AG)8C 9 8 68 5.67 7.56 0.53 4.0 0.71
3 809 (AG)8G 12 9 109 9.08 9.08 0.36 3.8 0.82
4 815 (CT)8G 10 7 97 8.08 9.70 0.32 3.8 0.82
5 834 (AG)8YT 11 7 112 9.33 10.18 0.25 3.3 0.87
6 835 (AG)8YC 15 13 80 6.67 5.33 0.68 5.0 0.71
7 836 (AG)8YA 18 13 131 10.92 7.28 0.53 7.1 0.76
8 884 HBH(AG)7 20 18 108 9.00 5.40 0.70 8.7 0.62
Mean 14.5 11.5 108 8.97 7.75 0.49 5.6 0.76

(GA)n-based primers
9 810 (GA)8T 12 7 128 10.67 10.67 0.18 2.7 0.91
10 811 (GA)8C 9 7 78 6.50 8.67 0.40 2.7 0.81
11 812 (GA)8A 18 9 142 11.83 7.89 0.42 4.0 0.87
12 822 (TC)8A 12 10 70 5.83 5.83 0.63 3.7 0.74
13 840 (GA)8YT 11 8 88 7.33 8.00 0.44 3.3 0.82
14 841 (GA)8YC 14 9 108 9.00 7.71 0.46 4.0 0.83
15 842 (GA)8YG 22 22 120 10.00 5.45 0.75 14.3 0.50
16 885 BHB(GA)7 19 10 190 15.83 10.00 0.25 4.0 0.89
Mean 14.6 10.2 115.5 9.62 8.03 0.44 4.8 0.80

17 872 (GATA)4 13 10 74 6.17 5.69 0.60 7.67 0.58
*

PS: Primer sequence;

Y: T or C; n bp: number of band positions (loci); n pl: number of polymorphic loci; n b: number of bands; r b/a: mean number of bands/accession; r b/l: mean number of bands/locus; PIC: polymorphism information content; Rp: resolving power; MGS: mean genetic similarity