TABLE 3.

Observed LD according to sample size and by population and separation distance

	PS1-IsH		PS2		PS3
χ2′*	All (69.4)	BE (40) (27.2)	All (186.7)	BE (100) (68.4)	All (147)	BE (100) (100)	BE (40) (40)
Separation distance <5 cM
0.5–0.6		0.08	0.01	0.04			0.02
0.4–0.5		0.13	0.01	0.01			0.03
0.3–0.4	0.22	0.21	0.01	0.05		0.01	0.10
0.2–0.3	0.22	0.26	0.06	0.14		0.04	0.33
0.1–0.2	0.33	0.24	0.24	0.49	0.50	0.64	0.44
0.0–0.1	0.22	0.08	0.66	0.28	0.50	0.31	0.09
n	18		82		16
Mean	0.19	0.28	0.11	0.16	0.10	0.12	0.21
>50 or nonsyntenic
0.5–0.6
0.4–0.5		0.06					0.01
0.3–0.4	0.07	0.14					0.01
0.2–0.3		0.20		0.03			0.21
0.1–0.2	0.29	0.37	0.03	0.42	0.05	0.09	0.60
0.0–0.1	0.64	0.23	0.98	0.55	0.95	0.91	0.16
n	14	70	40		20
Mean	0.10	0.19	0.04	0.09	0.06	0.07	0.16

In parentheses, the mean number of haplotypes per marker pair. n, number of marker pairs; All, all marker pairs included; BE, bootstrap estimates (BE 40, 10 bootstrap samples, each containing 40 individuals; BE 100, 5 bootstrap samples, each containing 100 individuals).