Table 1.
Redesign target | Enzyme | Rank | Target substrate |
WT substrate (Phe) |
||||
---|---|---|---|---|---|---|---|---|
kcat min−1 | Km mM | kcat/Km mM−1 min−1 | kcat min−1 | Km mM | kcat/Km mM−1 min−1 | |||
Leu† | T278L/A301G | 1 | 1.16 ± 0.10 | 0.015 ± 0.002 | 79.49 ± 13.67 | 3.37 ± 0.08 | 0.097 ± 0.013 | 34.94 ± 4.76 |
T278M/A301G | 8 | 2.63 ± 0.24 | 0.130 ± 0.009 | 20.34 ± 3.11 | 4.25 ± 0.16 | 0.318 ± 0.009 | 13.35 ± 0.14 | |
A322V/A301G | 9 | 4.18 ± 0.52 | 0.448 ± 0.019 | 9.34 ± 1.08 | 3.17 ± 0.2 | 0.195 ± 0.019 | 16.35 ± 1.3 | |
WT‡ | 28.74 ± 1.58 | 6.98 ± 1.00 | 4.15 ± 0.36 | 1.73 ± 0.29 | 0.0018 ± 0.0004 | 951.4 ± 111.2 | ||
Arg† | T278D/A301G | 1 | 0.238 ± 0.007 | 46.43 ± 4.79 | 0.0051 ± 0.0004 | 0.50 ± 0.02 | 0.153 ± 0.02 | 3.29 ± 0.38 |
WT | ND§ | ND | ND | |||||
Glu† | T278H/A301G | 2 | 0.3773 ± 0.035 | 25.49 ± 5.65 | 0.0151 ± 0.0023 | 0.38 ± 0.03 | 0.027 ± 0.006 | 14.7 ± 2.48 |
WT | ND | ND | ND | |||||
Lys† | T278D/A301G | 4 | 1.09 ± 0.08 | 78.33 ± 16.39 | 0.014 ± 0.003 | 0.50 ± 0.02 | 0.153 ± 0.02 | 3.29 ± 0.38 |
WT | ND | ND | ND | |||||
Asp† | T278K/A301G | 3 | >0.25¶ | 16.19 ± 1.32 | 28.93 ± 1.91 | 0.56 ± 0.06 | ||
WT | ND | ND | ND | |||||
Leu‖ | T278L/A301G/S447N | 0.85 ± 0.11 | 0.0054 ± 0.001 | 159.86 ± 14.98 | 3.36 ± 0.23 | 0.168 ± 0.027 | 20.38 ± 3.97 | |
I277L/T278L/A301G | 1.52 ± 0.09 | 0.013 ± 0.002 | 119.79 ± 9.75 | 5.21 ± 0.22 | 0.306 ± 0.004 | 17.00 ± 0.55 | ||
V187L/T278L/A301G | 1.69 ± 0.22 | 0.011 ± 0.001 | 155.51 ± 26.71 | 3.24 ± 0.16 | 0.201 ± 0.036 | 16.43 ± 2.47 | ||
I277L/T278L/A301G/S447N | 0.37 ± 0.04 | 0.0054 ± 0.0007 | 69.07 ± 13.09 | 2.09 ± 0.10 | 0.282 ± 0.023 | 7.44 ± 0.67 |
†K* active-site mutants with their respective ranks from the 2-point mutation searches for the different substrates.
‡For clarity, the WT enzyme:WT substrate rates are shown only once.
§ND, not detectable.
¶Km and kcat/Km cannot be determined accurately because the solubility of Asp (≈50 mM in water) limits the reaction velocity under the experimental condition, in which the velocity remains linearly dependent on the concentration of the substrate.
‖ Bolstering mutations added to the T278L/A301G mutant with Leu as substrate.