TABLE 4.
CORRELATION IN EXPRESSION PATTERNS BETWEEN MICROARRAY AND qPCR DATA
| Gene | Correlation (r, GAPDH) | P Value |
|---|---|---|
| KLF8 | 0.793 | P < 0.05 |
| CYYR1 | 0.674 | P < 0.05 |
| AMIGO2 | 0.662 | P < 0.05 |
| HIF3A | 0.612 | P < 0.05 |
| RUNX1T1 | 0.600 | P < 0.05 |
| KITLG | 0.591 | P < 0.05 |
| SEMA6D | 0.585 | P < 0.05 |
| DAAM1 | 0.545 | P < 0.05 |
| KIT | 0.518 | P < 0.05 |
| HPGD | 0.512 | P < 0.05 |
| IREB2 | 0.488 | P < 0.05 |
| MRPS25 | 0.468 | P < 0.05 |
| ZNF207 | 0.450 | P < 0.05 |
| ARHGAP | 0.435 | P < 0.05 |
| CROP | 0.416 | P < 0.10 |
| QKI | 0.400 | P < 0.10 |
| SERPINB9 | 0.399 | P < 0.10 |
| PTCH | 0.357 | P < 0.10 |
| C1QTNF7 | 0.341 | P < 0.10 |
For a given gene, the RMA-derived signal intensity for each subject was correlated with the gene expression level determined by qPCR as defined by the dCt using GAPDH as the endogenous control gene. Listed is the maximum absolute value correlation coefficient and associated significance value for each gene.