Table 2.
Correlation of intronic miRNA/ host gene expression in oligodendrocyte lineage cells
| Host gene | miRNA | A2B5+ GalC− miRNA value | A2B5− GALC+ miRNA value | Affymetrix ID | A2B5+ GalC− NEV | A2B5− GALC+ NEV | Correlation gene/miRNA expression |
|---|---|---|---|---|---|---|---|
| ACADVL | rno-miR-324-5p | 2046 | 3904 | 1367897_at | 0.97 | 1.05 | + |
| ARRB1 | rno-miR-326 | 125 | 266 | 1368968_at | 0.93 | 1 | + |
| CEECAM1 | rno-miR-219 | 1972 | 41820 | 1374763_at | 0.92 | 1.09 | + |
| CHM | rno-miR-361 | 8458 | 6514 | 1369227_at | 1 | 1.05 | + |
| COPZ2 | rno-miR-152 | 1103 | 3280 | 1372305_at | 0.82 | 1.41 | + |
| CTDSPL | rno-miR-26a | 30816 | 25555 | 1379238_at | 0.96 | 1.16 | + |
| CTDSPL | rno-miR-26a | 30816 | 25555 | 1391635_at | 0.99 | 1.09 | + |
| CTDSP1 | rno-miR-26b | 15014 | 13247 | 1388533_at | 0.97 | 1.12 | + |
| DNM3 | rno-miR-214 | 333 | 1342 | 1370672_a_at | 0.76 | 1.56 | + |
| EGFL7 | rno-miR-126 | 14557 | 17916 | 1370402_at | 0.71 | 1.16 | + |
| EGFL7 | rno-miR-126 | 14557 | 17916 | 1393427_s_at | 0.81 | 1.35 | + |
| EHD1 | rno-miR-192 | 348 | 393 | 1372317_at | 0.9 | 1.26 | + |
| EHD1 | rno-miR-192 | 348 | 393 | 1388623_at | 0.88 | 1.26 | + |
| ELMO3 | rno-miR-328 | 606 | 849 | 1374995_at | 1.01 | 1.03 | + |
| EVL | rno-miR-342 | 9046 | 13747 | 1367861_at | 1.14 | 0.92 | + |
| HNRPK | rno-miR-7 | 3124 | 96 | 1367895_at | 1.06 | 0.87 | + |
| HNRPK | rno-miR-7 | 3124 | 96 | 1398797_at | 1.04 | 0.97 | + |
| HUWE1 | rno-let-7f | 33031 | 18733 | 1370684_s_at | 1.05 | 0.93 | + |
| HUWE1 | rno-let-7f | 33031 | 18733 | 1389814_at | 1 | 1.01 | + |
| HUWE1 | rno-miR-98 | 4112 | 2632 | 1370684_s_at | 1.05 | 0.93 | + |
| HUWE1 | rno-miR-98 | 4112 | 2632 | 1389814_at | 1 | 1.01 | + |
| LOC288010 | rno-miR-28 | 980 | 1665 | 1385564_at | 0.94 | 1.07 | + |
| LOC288010 | rno-miR-28 | 980 | 1665 | 1392361_at | 0.96 | 1.09 | + |
| LOC688299 | rno-miR-338 | 274 | 15629 | 1385333_at | 0.46 | 1.6 | + |
| LOC498154 | rno-miR-339 | 526 | 2286 | 1383301_at | 0.93 | 1.11 | + |
| MCM7 | rno-miR-25 | 25881 | 9359 | 1388744_at | 1.3 | 0.68 | + |
| MCM7 | rno-miR-93 | 14677 | 7332 | 1388744_at | 1.3 | 0.68 | + |
| MCM7 | rno-miR-106b | 16362 | 4993 | 1388744_at | 1.3 | 0.68 | + |
| NFYC | rno-miR-30c | 26013 | 22288 | 1368820_at | 0.97 | 1.06 | + |
| NFYC | rno-miR-30e | 12458 | 9074 | 1368820_at | 0.97 | 1.06 | + |
| NR6A1 | rno-miR-181b | 21463 | 18819 | 1398548_at | 0.98 | 0.95 | + |
| PANK1 | rno-miR-107 | 12374 | 17520 | 1382924_at | 1.04 | 0.93 | + |
| PANK2 | rno-miR-103 | 12934 | 18146 | 1378378_at | 1.13 | 0.98 | + |
| PANK2 | rno-miR-103 | 12934 | 18146 | 1392033_a_at | 1.11 | 0.97 | + |
| PANK3 | rno-miR-103 | 12934 | 18146 | 1391348_at | 0.98 | 1.05 | + |
| PPARGC1B | rno-miR-378 | 42 | 421 | 1392715_at | 0.88 | 1.22 | + |
| PTK2 | rno-miR-151 | 1725 | 2110 | 1387875_at | 0.91 | 1.08 | + |
| RGD1308065 | rno-miR-130b | 2407 | 2419 | 1389807_at | 0.92 | 1.04 | + |
| RGD1308065 | rno-miR-130b | 2407 | 2419 | 1392096_at | 1.03 | 1.06 | + |
| RGD1307084 | rno-miR-301 | 9283 | 6998 | 1379261_at | 1.28 | 0.92 | + |
| RIMB1 | rno-miR-142-3p | 123 | 1641 | No probe | No probe | No probe | No probe |
| RIMB1 | rno-miR-142-5p | 1894 | 6892 | No probe | No probe | No probe | No probe |
| SLIT2 | rno-miR-218 | 2192 | 821 | 1382685_at | 1.09 | 0.86 | + |
| SLIT2 | rno-miR-218 | 2192 | 821 | 1395986_at | 1.16 | 0.84 | + |
| SLIT3 | rno-miR-218 | 2192 | 821 | 1368920_at | 0.77 | 1.24 | + |
| SMC4L1 | rno-miR-15b | 11688 | 8123 | 1383008_at | 1.35 | 0.66 | + |
| SMC4L1 | rno-miR-16 | 37424 | 24548 | 1383008_at | 1.35 | 0.66 | + |
| TRPM3 | rno-miR-204 | 1175 | 764 | 1380800_at | 0.92 | 1.03 | + |
| ZFP265 | rno-miR-186 | 3214 | 4353 | 1387117_at | 0.98 | 1.19 | + |
| 2610203C20Rik | rno-miR-125b | 46397 | 12627 | 1373651_at | 1.35 | 0.71 | + |
The normalized expression values (NEVs) were obtained by normalizing the signals of all the genes present in rat Affymetrix microarrays and across all the replicates. Bold denotes NEV < 0.9 and highlights the host genes with low NEVs that are either absent or moderately expressed. +, The A2B5+ GalC− NEV and/or the A2B5− GALC+ NEV is higher than 0.9. No probe, The microarray does not contain any probe to detect the host gene.