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. 2008 Jul 15;47(29):7715–7725. doi: 10.1021/bi8003704

Table 2. Comparison of Calculated Geometric Parameters of the ES Complex for the Wild-Type Enzyme and Y194F Mutant with Available X-ray Structures of AHL Lactonases.

  bond length (Å)
  wild type (ES) Y194F (ES) 2A7M (11) (apo) 2BTN (12) (apo) 2BR6 (12) (EI) wild type (16) (EP)
Zn1−Zn2 3.49 ± 0.11 3.51 ± 0.11 3.3 3.4 3.4 3.7
Zn2−Oδ1(Asp108) 2.34 ± 0.13 2.36 ± 0.14 2.3 2.3 2.3 2.8
Zn1−Oδ2(Asp191) 2.90 ± 0.18 3.08 ± 0.29 2.6 2.6 2.6 2.4
Zn2−Oδ2(Asp191) 2.22 ± 0.08 2.21 ± 0.08 2.0 2.1 2.1 2.1
Zn2−Oδ1(Asp191) 3.04 ± 0.15 3.07 ± 0.15 3.3 3.2 3.2 2.7
Zn1−Nε2(His104) 2.05 ± 0.06 2.04 ± 0.06 2.1 2.3 2.3 2.1
Zn1−Nδ1(His106) 2.09 ± 0.08 2.07 ± 0.07 2.2 2.3 2.3 2.1
Zn1−Nε2(His169) 2.02 ± 0.06 2.02 ± 0.06 2.1 2.3 2.2 2.1
Zn2−Nε2(His109) 2.01 ± 0.06 2.03 ± 0.06 2.0 2.2 2.1 2.1
Zn2−Nε2(His235) 2.01 ± 0.06 2.02 ± 0.06 2.1 2.2 2.2 2.0
Zn1−Ow 1.99 ± 0.06 1.98 ± 0.05 2.0 2.1 2.0 a
Zn2−Ow 2.14 ± 0.08 2.12 ± 0.07 2.0 2.2 2.2 a
O2−Zn2 3.79 ± 0.32 4.83 ± 0.54 a a a a
Ow−Oδ2(Asp108) 2.77 ± 0.09 2.78 ± 0.10 2.9 2.6 2.5 a
Hw−Oδ2(Asp108) 1.84 ± 0.10 1.84 ± 0.11 a a a a
C1−Ow 2.58 ± 0.36 3.74 ± 0.63 a a a a
O1−HO(Tyr194) 1.82 ± 0.20 a a a a a
O3−Ob 2.73 ± 0.15 2.76 ± 0.23 a a a 2.6
O3−Hb1 1.79 ± 0.17 1.81 ± 0.26 a a a a
O3−N(Phe107) 4.05 ± 0.73 4.05 ± 0.74 a a a 3.8
O3−HN(Phe107) 3.11 ± 0.27 3.16 ± 0.74 a a a a
Ob−N(Phe107) 3.12 ± 0.27 3.12 ± 0.37 a a a 3.0
Ob−HN(Phe107) 2.24 ± 0.33 2.25 ± 0.46 a a a a
a

Value not applicable.