Table 2. Comparison of Calculated Geometric Parameters of the ES Complex for the Wild-Type Enzyme and Y194F Mutant with Available X-ray Structures of AHL Lactonases.
| bond length (Å) |
||||||
|---|---|---|---|---|---|---|
| wild type (ES) | Y194F (ES) | 2A7M (11) (apo) | 2BTN (12) (apo) | 2BR6 (12) (EI) | wild type (16) (EP) | |
| Zn1−Zn2 | 3.49 ± 0.11 | 3.51 ± 0.11 | 3.3 | 3.4 | 3.4 | 3.7 |
| Zn2−Oδ1(Asp108) | 2.34 ± 0.13 | 2.36 ± 0.14 | 2.3 | 2.3 | 2.3 | 2.8 |
| Zn1−Oδ2(Asp191) | 2.90 ± 0.18 | 3.08 ± 0.29 | 2.6 | 2.6 | 2.6 | 2.4 |
| Zn2−Oδ2(Asp191) | 2.22 ± 0.08 | 2.21 ± 0.08 | 2.0 | 2.1 | 2.1 | 2.1 |
| Zn2−Oδ1(Asp191) | 3.04 ± 0.15 | 3.07 ± 0.15 | 3.3 | 3.2 | 3.2 | 2.7 |
| Zn1−Nε2(His104) | 2.05 ± 0.06 | 2.04 ± 0.06 | 2.1 | 2.3 | 2.3 | 2.1 |
| Zn1−Nδ1(His106) | 2.09 ± 0.08 | 2.07 ± 0.07 | 2.2 | 2.3 | 2.3 | 2.1 |
| Zn1−Nε2(His169) | 2.02 ± 0.06 | 2.02 ± 0.06 | 2.1 | 2.3 | 2.2 | 2.1 |
| Zn2−Nε2(His109) | 2.01 ± 0.06 | 2.03 ± 0.06 | 2.0 | 2.2 | 2.1 | 2.1 |
| Zn2−Nε2(His235) | 2.01 ± 0.06 | 2.02 ± 0.06 | 2.1 | 2.2 | 2.2 | 2.0 |
| Zn1−Ow | 1.99 ± 0.06 | 1.98 ± 0.05 | 2.0 | 2.1 | 2.0 | —a |
| Zn2−Ow | 2.14 ± 0.08 | 2.12 ± 0.07 | 2.0 | 2.2 | 2.2 | —a |
| O2−Zn2 | 3.79 ± 0.32 | 4.83 ± 0.54 | —a | —a | —a | —a |
| Ow−Oδ2(Asp108) | 2.77 ± 0.09 | 2.78 ± 0.10 | 2.9 | 2.6 | 2.5 | —a |
| Hw−Oδ2(Asp108) | 1.84 ± 0.10 | 1.84 ± 0.11 | —a | —a | —a | —a |
| C1−Ow | 2.58 ± 0.36 | 3.74 ± 0.63 | —a | —a | —a | —a |
| O1−HO(Tyr194) | 1.82 ± 0.20 | —a | —a | —a | —a | —a |
| O3−Ob | 2.73 ± 0.15 | 2.76 ± 0.23 | —a | —a | —a | 2.6 |
| O3−Hb1 | 1.79 ± 0.17 | 1.81 ± 0.26 | —a | —a | —a | —a |
| O3−N(Phe107) | 4.05 ± 0.73 | 4.05 ± 0.74 | —a | —a | —a | 3.8 |
| O3−HN(Phe107) | 3.11 ± 0.27 | 3.16 ± 0.74 | —a | —a | —a | —a |
| Ob−N(Phe107) | 3.12 ± 0.27 | 3.12 ± 0.37 | —a | —a | —a | 3.0 |
| Ob−HN(Phe107) | 2.24 ± 0.33 | 2.25 ± 0.46 | —a | —a | —a | —a |
Value not applicable.