Table 1.
Summary of signatures that match various RNAs
| Locus class | Distinct signatures | Total signatures | Mean frequencya | Mean hitsb |
|---|---|---|---|---|
| Nonprotein-coding RNAs | ||||
| snoRNA | 20 (0.02%) | 56 (0.01%) | 2.8 | 2.1 |
| snRNA | 293 (0.26%) | 5413 (0.68%) | 18.47 | 10.08 |
| tRNA | 1133 (1.02%) | 38 404 (4.82%) | 33.9 | 8.56 |
| rRNA | 9332 (8.40%) | 446 596 (56.01%) | 47.86 | 5.52 |
| Small RNAs matching protein-coding genes | ||||
| Sense | 10 429 (9.38%) | 62 041 (7.78%) | 5.95 | 21.35 |
| Antisense | 5896 (5.30%) | 20 805 (2.61%) | 3.53 | 38.87 |
| Sense and antisense | 1032 (0.93%) | 4885 (0.61%) | 4.73 | 341.69 |
| miRNAs | ||||
| Known | 228 (0.21%) | 4029 (0.50%) | 17.67 | 380.96 |
| Novel | 328 (0.30%) | 7359 (0.92%) | 22.44 | 2.64 |
| Other small RNAs | 82 470 (74.2%) | 207 811 (26.1%) | 2.52 | – |
| Total | 111 161 (100%) | 797 399 (100%) | 7.17 | – |
aThe average frequency of sequenced signatures matching different type RNAs.
bThe average hit numbers on the chromosomes of signatures.
The mean hits of ‘other small RNAs’ and total small RNAs are not calculated as some signatures without hit on the genome, which are indicated as ‘–.’ Numbers in brackets indicate the percentage of the distinct signatures or total signatures.